CI #3997
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
54s
pyright
36s
build-docs
/
build
1m 48s
check-docs
41s
check-subsample-config-schema
43s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
14s
rebuild-docker-image
0s
Annotations
40 errors and 9 warnings
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pathogen-repo-ci-v0 (rsv)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci-v0 (rsv)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci (mumps)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci (mumps)
Process completed with exit code 1.
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pathogen-repo-ci (mumps)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci-v0 (seasonal-flu)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci-v0 (seasonal-flu)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci (lassa)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci (lassa)
Process completed with exit code 1.
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pathogen-repo-ci (lassa)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci-v0 (avian-flu)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci-v0 (avian-flu)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci (mpox)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci (mpox)
Process completed with exit code 1.
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pathogen-repo-ci (mpox)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci-v0 (vcf-input-tutorial)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci-v0 (vcf-input-tutorial)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci (dengue)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci (dengue)
Process completed with exit code 1.
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pathogen-repo-ci (dengue)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci (rabies)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci (rabies)
Process completed with exit code 1.
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pathogen-repo-ci (rabies)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci (oropouche)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci (oropouche)
Process completed with exit code 1.
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pathogen-repo-ci (oropouche)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci-v0 (ncov)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci-v0 (ncov)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci (zika)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci (zika)
Process completed with exit code 1.
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pathogen-repo-ci (zika)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci (measles)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci (measles)
Process completed with exit code 1.
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pathogen-repo-ci (measles)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci (wnv)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci (wnv)
Process completed with exit code 1.
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pathogen-repo-ci (wnv)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci (seasonal-cov)
ENOENT: no such file or directory, lstat '/home/runner/work/_temp/setup-micromamba/micromamba-shell'
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pathogen-repo-ci (seasonal-cov)
Process completed with exit code 1.
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pathogen-repo-ci (seasonal-cov)
The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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pathogen-repo-ci-v0 (rsv)
No files were found with the provided path: ./pathogen-repo/auspice/
./pathogen-repo/results/
./pathogen-repo/benchmarks/
./pathogen-repo/logs/
./pathogen-repo/.snakemake/log/. No artifacts will be uploaded.
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pathogen-repo-ci-v0 (seasonal-flu)
No files were found with the provided path: ./pathogen-repo/auspice/
./pathogen-repo/results/
./pathogen-repo/benchmarks/
./pathogen-repo/logs/
./pathogen-repo/.snakemake/log/. No artifacts will be uploaded.
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pathogen-repo-ci-v0 (avian-flu)
No files were found with the provided path: ./pathogen-repo/auspice/
./pathogen-repo/results/
./pathogen-repo/benchmarks/
./pathogen-repo/logs/
./pathogen-repo/.snakemake/log/. No artifacts will be uploaded.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
No files were found with the provided path: ./pathogen-repo/auspice/
./pathogen-repo/results/
./pathogen-repo/benchmarks/
./pathogen-repo/logs/
./pathogen-repo/.snakemake/log/. No artifacts will be uploaded.
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pathogen-repo-ci-v0 (ncov)
No files were found with the provided path: ./pathogen-repo/auspice/
./pathogen-repo/results/
./pathogen-repo/benchmarks/
./pathogen-repo/logs/
./pathogen-repo/.snakemake/log/. No artifacts will be uploaded.
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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189 KB |
sha256:37fbeb6258163cfee03f3301580ca2d3367715c07d7b8400cfa4908d9416f485
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output-yellow-fever
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2.11 MB |
sha256:a0181df3c8bc811836dd44128ffe2fef2d8e3dd5333eb076aefcd35966ee05d3
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