CI #3998
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
1m 14s
pyright
20s
build-docs
/
build
1m 32s
check-docs
47s
check-subsample-config-schema
45s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
19s
rebuild-docker-image
0s
Annotations
17 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-10-21-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-10-21-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-10-21-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-10-21-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-10-21-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-10-21-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-10-21-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-10-21-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-10-21-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-10-21-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-10-21-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-10-21-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-10-21-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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189 KB |
sha256:1cc013d05ccd7f760349ba43f0345f1577e5d6d9c74347e1163a851bc323609b
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output-avian-flu
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98.2 KB |
sha256:8d70d2eb8407fc5b606599f4ac8ec37235d0721fa4ac69cd2a00374557f93a23
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output-dengue
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436 KB |
sha256:671b03e40f602d433477f7fb39b3b80911c7ce3318c9e49231517a6b7b69e37b
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output-lassa
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1.52 MB |
sha256:644f66ebfc9768f6fe2f334af84e0d8a5d83ce34bb5ff543f036b18b296dc958
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output-measles
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3.91 MB |
sha256:4216783f3a48cb48213e94359e7f4ae3aa36ebd612cfc8d9de03589fa8b28650
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output-mpox
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14.4 MB |
sha256:582d2a7c06f32af49754d371eedd663a2eed8beaaa971945a5d40f262c18bd89
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output-mumps
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379 KB |
sha256:9ce5842aeed5dc0d7ca6b3cccba48bc117bf6ed9ed0661ca2e74431971286a7b
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output-ncov
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713 KB |
sha256:dc0c2989869a88342039dd1bf7adc77da6c88ca99291f641924b006132cbe6a7
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output-oropouche
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588 KB |
sha256:3b0acdc9f08ff1bd640f56f94d155db7f80b41f42b753c9d30981db877d3f722
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output-rabies
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5.28 MB |
sha256:d8cc12ff2cd5cc6dfe605c2f4734864713f7048b2f0d4c544926c92a2fe3cf1d
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output-rsv
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1.2 MB |
sha256:0b5a448b6db1e6f556f1d7a8ae156cc593d3f1c83ea040553515b44c3fa2b96a
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output-seasonal-cov
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2.47 MB |
sha256:d6fd099f6ee6ed4950e1f1f56d2c7955c1aa1601ed9f2c0c264279402be9379f
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output-seasonal-flu
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60.4 KB |
sha256:b091c38270bd341361e0ad40b2cd25bcf9e5dd7af1647577e7bc0224d4a4b327
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output-vcf-input-tutorial
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5.03 MB |
sha256:7b88d08a99a8ce284aaf1a361ec445d8a61facbea8f7124b66427030ad959590
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output-wnv
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241 KB |
sha256:14f20af9809266f9ffb71d14bfebf3b104696efdd912ec15908ea0e9d9e9f6ea
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output-yellow-fever
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2.14 MB |
sha256:2d4b7a59f9a5b74cf37a0b13c54466f7380a854282cdc10cff53bf19c6c86a8b
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output-zika
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807 KB |
sha256:9b18dd6176891785d69809ef3f8f579293c3a2e55891a6af12d15fd9a4ed45f5
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