CI #4005
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
55s
pyright
18s
build-docs
/
build
1m 29s
check-docs
46s
check-subsample-config-schema
1m 34s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
16s
rebuild-docker-image
0s
Annotations
17 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-10-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-10-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-10-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-10-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-10-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-10-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-10-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-10-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-10-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-10-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-10-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-10-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-10-22-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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191 KB |
sha256:194027e1885a90720c97dd6dbceb4b735122936824da775f6280759ceb7e02d0
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output-avian-flu
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98.2 KB |
sha256:d6067aa40d5e6a86153218372a1e0f4575bbc5ee538c7b626000e5d271d86606
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output-dengue
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436 KB |
sha256:131731eda5041f4147dc2d52473f60d89f502fda136b340b84c43094a4abe615
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output-lassa
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1.52 MB |
sha256:74fd10cae3ec888940c5f8ddf11f1850e4189d58023c23478540f87c5ce2a68e
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output-measles
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3.93 MB |
sha256:3d4135eb0263fec1e16fada66ff1e23b312e4026bbfe3b2120c0f685a8c40754
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output-mpox
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14.4 MB |
sha256:6a1a8b655bf2601341f534b5d4376525945efd11b2d27148361ca591303ae69f
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output-mumps
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378 KB |
sha256:af01f4d5725aaf36fb4d1daec5ae5e42e950a93579d0179c9e208ed3c246aef0
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output-ncov
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718 KB |
sha256:7ff6713ece98930fb508845579ddc824932ce9346d22035d2b59cea48179a0b3
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output-oropouche
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588 KB |
sha256:0e165ef4b5217ac62e10a7b1906263e54545e45ab5470f6777d4bdca3aa84f99
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output-rabies
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5.28 MB |
sha256:14139c311314b0dd0513664b5aa94c479d2410197e07a11ca51ebedd48651683
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output-rsv
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1.2 MB |
sha256:71196a74c4fb888c4fbd8f35089b26b80fecd5f59f1351f4a4e969940f656fa4
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output-seasonal-cov
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2.49 MB |
sha256:14c4b77718ed59bc9ba6e25cc88daa52d61703cf4b8b6fe5115426bb4800c794
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output-seasonal-flu
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60.3 KB |
sha256:1bc4c86d3c83a25b6343e970a420858de388f3970652dca763575383b68d5062
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output-vcf-input-tutorial
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5.03 MB |
sha256:6d9dbf5ce1a7cdc123365a5cd6a1a7745ae1413f74358d26cbf24e04f6809e0e
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output-wnv
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241 KB |
sha256:714f723f41e305e8b22bcb3e0103dbf2c448ba56b9b966cb7154cdff864f950b
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output-yellow-fever
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2.13 MB |
sha256:1836e662564881e0bac162875ff21c23aa6e4a1b42d61826e4c5d922a83ff24e
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output-zika
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807 KB |
sha256:4eddbde776b71417ba31d7a5ab7139feffc8defbfe7d932fb310354c3d17a617
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