fix(filter): allow --include/exclude-where for columns in --metadata-id-columns #4012
corneliusroemerci.yaml
on: pull_request
Matrix: pytest-cram
mypy
54s
pyright
19s
build-docs
/
build
1m 38s
check-docs
49s
check-subsample-config-schema
50s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
0s
rebuild-docker-image
Annotations
35 errors and 3 warnings
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test (python=3.10 biopython=1.80 numpy=latest)
Process completed with exit code 1.
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test (python=3.10 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.10 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.13 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.13 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.10 biopython=1.80 numpy=1.26.4)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.10 biopython=1.80 numpy=1.26.4)
The operation was canceled.
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test (python=3.11 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.11 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.11 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.11 biopython=1.82 numpy=latest)
The operation was canceled.
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test (python=3.9 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.9 biopython=1.80 numpy=latest)
The operation was canceled.
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test (python=3.9 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.9 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.10 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.10 biopython=1.82 numpy=latest)
The operation was canceled.
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test (python=3.10 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.10 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.12 biopython=latest numpy=1.26.4)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.12 biopython=latest numpy=1.26.4)
The operation was canceled.
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test (python=3.12 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.12 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.11 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.11 biopython=1.80 numpy=latest)
The operation was canceled.
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test (python=3.11 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.11 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.12 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.12 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.12 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.12 biopython=1.82 numpy=latest)
The operation was canceled.
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test (python=3.9 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.9 biopython=1.82 numpy=latest)
The operation was canceled.
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test (python=3.13 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80" failed
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test (python=3.13 biopython=latest numpy=latest)
The operation was canceled.
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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output-avian-flu
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98.3 KB |
sha256:5401ee1315b96f5009274a2090b4043c925d66748bceb7d72f9a6d889d06859f
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output-dengue
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436 KB |
sha256:3fd0a2bf6adc3408b5a96c92fd4aff43757c7c58424f87e5f1726e18ac6493f6
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output-lassa
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370 KB |
sha256:5c06b07d28a528dce64045c329b74e1e99a05c9915362b0fa78e102d0ee32a46
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output-measles
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3.9 MB |
sha256:e91dec6e316412b99ca0657e5f3a80256c70a885f5242eac1c3dbafd041b3c77
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output-mpox
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14.4 MB |
sha256:ab637063d4a9e2e20fa01b2439db86127e31e341b15a3a868826c6fcde737f88
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output-mumps
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378 KB |
sha256:16ffaeda4156ca19c41ac70989ccd840f9abddb11e2ba32b8b6635d9291dd872
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output-ncov
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713 KB |
sha256:c20c0189b4917a1a5c0e731a79a8e7b47e0e0a3e7e3b9a3fef241594f8e35c29
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output-oropouche
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590 KB |
sha256:b30fecfc7c8aae515faa33138f275665d64b77c89eaf654e1a6e34d4842625f4
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output-rabies
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5.28 MB |
sha256:f17f45243217111c7c1937c9b0d5c4bf5c69853b1961646a17e00124b17771a6
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output-rsv
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1.2 MB |
sha256:01ed8afbb47db2bfca2a3d784bc9cde34d196c1bcdb4ec5ef968728a4a2dd429
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output-seasonal-cov
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2.48 MB |
sha256:017e6712c0d46538e78695785f471edff7e5308e29e61516bd05f0199305dff7
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output-seasonal-flu
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60.3 KB |
sha256:b8b8b7b9afca1bb95a5e8829a2dc71bcdae9b963f74aeac1a4d3043a668a1181
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output-vcf-input-tutorial
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5.03 MB |
sha256:8e6363654f056a80cbac1c1c43f28f7273ba6c803ea107c60a2c36c157f79627
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output-wnv
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241 KB |
sha256:6fa20861f9bf49a9652c71534b9c7064024a97e58f23f8eeb2e5673a9a9cbd84
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output-yellow-fever
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2.11 MB |
sha256:d656bf9b1e700f4dcc9fa079bb9cfdc159b03c278af86bdc3519a5d549ae5330
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output-zika
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807 KB |
sha256:f8b503e337c87ce93387c5d1d170386b4c14fe941c80332f1ab591ad11b0c824
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