Skip to content

fix(filter): allow --include/exclude-where for columns in --metadata-id-columns #4013

fix(filter): allow --include/exclude-where for columns in --metadata-id-columns

fix(filter): allow --include/exclude-where for columns in --metadata-id-columns #4013

Triggered via pull request October 24, 2025 14:11
Status Success
Total duration 31m 47s
Artifacts 17

ci.yaml

on: pull_request
Matrix: pytest-cram
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
rebuild-docker-image
rebuild-docker-image
Fit to window
Zoom out
Zoom in

Annotations

4 warnings
pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.

Artifacts

Produced during runtime
Name Size Digest
coverage
191 KB
sha256:d06d85dfac711fcce1562b16b7246fd38b4855cf360144adeb6538e2fe84b4c6
output-avian-flu
98.3 KB
sha256:2d96c3ce5724e60dc7792ed8bce41c3f8fedb98342c90949afe7b51eb8bcd801
output-dengue
436 KB
sha256:37afd95310bdade1fd1bb20a2b2f1e71d53002f2af262f313dfa61a725f5118f
output-lassa
369 KB
sha256:049da5da1d44f6129b855759c70d05e34b11de54b63908f06cbdfd863202eee8
output-measles
3.92 MB
sha256:7ef81724a42438ad54607756eacb27b3ed9bcb3e3fe8462aca433157a2fd5923
output-mpox
14.4 MB
sha256:49f2d9639b84207dccab642b28b8174c9aa58e61c92e27f182aa4ba8a7c65510
output-mumps
378 KB
sha256:297add0464c3c151afa22f6723c9f00f89d9efad207b55f27ecf7f68a64bfc9a
output-ncov
710 KB
sha256:0b3a7849a548e0ceb961ed107cdf5fc71df02d4b6febc622feecc830182b23d5
output-oropouche
588 KB
sha256:0055cf4400a3ce2e4a5c64dede3a067e89650a4362277b45f51f47093e827ac5
output-rabies
5.28 MB
sha256:276c0325fe729e217c278ddf8fe7d6f0ab939bb1852c0f2fd7cf8fb00f4de939
output-rsv
1.2 MB
sha256:c55cf5924a4a3fbd2b8a5ad80008e759dd7e1a4c3a4381fe4b9ddebdbbbac110
output-seasonal-cov
2.49 MB
sha256:8656107e8fb3f7c0c033dc28c55c1f42363973f8908d09b1a3b3f48f016cb4e4
output-seasonal-flu
60.3 KB
sha256:62bccef5e737678c17e56975ea7c7d428c9f253849e6d9be6148bffb5598825a
output-vcf-input-tutorial
5.03 MB
sha256:3207dac759d965dfceed8a63c169464e87eeb90f64adcb7ef91062af747f31d9
output-wnv
241 KB
sha256:9dfee3480e6be21649f585543a86a49bc34eb5bc94951ba660e5c98ccb73ba2b
output-yellow-fever
2.13 MB
sha256:b2ef156c3e6b267e4e8b2f9de762f480df6bf0182f340eb6106967da28c64cd0
output-zika
807 KB
sha256:029f2532ed7d161a7be6f61a55d12d439f4014335193f5ee9b8f05f7295bdb85