CI #4017
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
53s
pyright
26s
build-docs
/
build
1m 26s
check-docs
42s
check-subsample-config-schema
42s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
12s
rebuild-docker-image
0s
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-10-24-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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191 KB |
sha256:9bff72169a5abff57b4a6a95856db8c1ee8d329a412045bef980a58a0aae6db4
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output-avian-flu
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98.2 KB |
sha256:836aabc8336e9304cb98263aeb6acc25725612ea6825b586d265f99c3a7c85cb
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output-dengue
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435 KB |
sha256:28d0e1520eecc6f0fbc62ca9bb8c79742613ebd924ee60ddb1df028d59df0660
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output-lassa
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368 KB |
sha256:2fe270040c7d4d12bbeeb6fcea8cd60143ac10cf1db0a625d234c01b5691a9a7
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output-measles
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3.91 MB |
sha256:3d573f63af05150f1c56d6aeffd49d9ca8419748e291d1f504cdc71e71520465
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output-mpox
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14.4 MB |
sha256:da24cd0c1fb606f1d0394858d71d25e43ea8b23f71306c5004140921c5cb0976
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output-mumps
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378 KB |
sha256:bb5ad77b3d569737cbff04241c81f1754f798dd6de6d791eafde60ff1ad4ab82
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output-ncov
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715 KB |
sha256:0373e7aae1fad40d8349d008ae31f44872a9df1305b63439f6e4785739e8bf2f
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output-oropouche
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588 KB |
sha256:908b04eccc68917d57e834637b09a13eddbc7fc900f5657f92f8b814c0ffdb22
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output-rabies
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5.28 MB |
sha256:0e665b3d7adb3cbb5b1f146a2c46c912121a3ef0c00eab54347958ef85c5e006
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output-rsv
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1.2 MB |
sha256:ae8773e413ed2415a776b922d2a51cfee7c0ec3019c6925e568bd3a7c5e190cf
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output-seasonal-cov
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2.49 MB |
sha256:8f685348e1c4fce722cffad2f9a24dd895b5384c8b54dd1b84027142df9ef557
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output-seasonal-flu
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60.3 KB |
sha256:7f0e52a76d1ff07ca7c28dc1caea73ea3af6f54276ca217c8a567cb1bf27958b
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output-vcf-input-tutorial
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5.03 MB |
sha256:144397d356219245d690e7e77b1d79931f0ea4b63a689e4ed99b4ff6c19b3231
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output-wnv
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240 KB |
sha256:ba549bcdf018c51ef48893fe2f143a2422b28c45522529b22bbd76c0f480703e
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output-yellow-fever
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2.12 MB |
sha256:ec34af1f0c145b819d752b9bb98ff80cc833638dc09064281db2f75b5eeea665
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output-zika
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807 KB |
sha256:a85d37365901f32bfac19e6d63f5df84e3db9b643aa8a468c15e638f2bb2a14e
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