Keep index as a column #4018
victorlinci.yaml
on: pull_request
Matrix: pytest-cram
mypy
58s
pyright
20s
build-docs
/
build
1m 29s
check-docs
41s
check-subsample-config-schema
46s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
0s
rebuild-docker-image
0s
Annotations
37 errors and 3 warnings
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pathogen-repo-ci-v0 (seasonal-flu)
Process completed with exit code 1.
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pathogen-repo-ci-v0 (ncov)
Process completed with exit code 1.
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test (python=3.11 biopython=latest numpy=latest)
Process completed with exit code 1.
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test (python=3.12 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.12 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.12 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.12 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.10 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.10 biopython=1.80 numpy=latest)
The operation was canceled.
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test (python=3.9 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.9 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.9 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.9 biopython=1.82 numpy=latest)
The operation was canceled.
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test (python=3.11 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.11 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.10 biopython=1.80 numpy=1.26.4)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.10 biopython=1.80 numpy=1.26.4)
The operation was canceled.
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test (python=3.13 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.13 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.11 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.11 biopython=1.80 numpy=latest)
The operation was canceled.
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test (python=3.9 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.9 biopython=1.80 numpy=latest)
The operation was canceled.
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test (python=3.10 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.10 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.12 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.12 biopython=1.82 numpy=latest)
The operation was canceled.
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test (python=3.11 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.11 biopython=1.82 numpy=latest)
The operation was canceled.
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test (python=3.12 biopython=latest numpy=1.26.4)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.12 biopython=latest numpy=1.26.4)
The operation was canceled.
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test (python=3.10 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.10 biopython=1.82 numpy=latest)
The operation was canceled.
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test (python=3.10 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.10 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.13 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_11" failed
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test (python=3.13 biopython=1.85 numpy=latest)
The operation was canceled.
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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output-avian-flu
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98.2 KB |
sha256:ff16e9c616208f9c16718a4833f3586c420655f366309dc8fc0cef09c8730983
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output-dengue
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436 KB |
sha256:741b5086b50aebeabc51c3f686012b4b380ac121d94b6c9bbe237819160a4278
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output-lassa
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369 KB |
sha256:306c5b372c2ac03899d9f2299dd0f64d0919a28f325d9712fcd089a3e29ab7ec
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output-measles
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3.92 MB |
sha256:cfbdcd0fa84a4f044e896fd6296ccc082e2adbae265baa6a22eaa75dbf3b6eb1
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output-mpox
|
14.4 MB |
sha256:1bc68c1c7f82adade826a94bdf484310bdad1985fb439f8054dbc489c8964301
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output-mumps
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379 KB |
sha256:6c5d2e17b2866af107150f6b8eba437b9393fa88bbb737964c5cfdd815c33935
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output-ncov
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57.8 KB |
sha256:edc39ce304bcf87170003582b2ee02987eeefe8c81fc1bdc602e0d7a5f959e69
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output-oropouche
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588 KB |
sha256:5f69919766f720751492e6346b4dbefe0963a9a32fe730d25a9cf1fb8568d50c
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output-rabies
|
5.28 MB |
sha256:044bbb07bc292b213fbfc5be9dd32be51b12164c06cf2cab616c7bad5bdc26d7
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output-rsv
|
1.2 MB |
sha256:077dec98bb35600a25ddcd72d00c4deefda0d283b0868aa309ec2133020dfffc
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output-seasonal-cov
|
2.46 MB |
sha256:3caff9216ee91a8ce0003fe4aefbef9d84ad2de465f0586f982ea3b52b29fd12
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output-seasonal-flu
|
6.3 KB |
sha256:a52a943afd15138e3b113c8469da80b04196051959114afd7ba066f73daeefe0
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output-vcf-input-tutorial
|
5.03 MB |
sha256:d13e52bfce0eadc5a5ab64afaaa407c76d98a4a0cb1f1f53d56da05f92b06728
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output-wnv
|
241 KB |
sha256:436f4d170f30e7a05d69eb2135d7fa4169f0610bc0032090fd34f1de796ec430
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output-yellow-fever
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2.15 MB |
sha256:bde31758f5d2cf66a43d0c2fe8107d728321fdfdc51eb7d5edef81c26ace3375
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output-zika
|
807 KB |
sha256:a462f5ec84eb3843c319bd2b85d9dac5ca129c6b8a84e32c2778829d43ebfb36
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