Keep index as a column #4019
victorlinci.yaml
on: pull_request
Matrix: pytest-cram
mypy
57s
pyright
22s
build-docs
/
build
1m 34s
check-docs
43s
check-subsample-config-schema
44s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
rebuild-docker-image
0s
Annotations
35 errors and 3 warnings
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pathogen-repo-ci-v0 (seasonal-flu)
Process completed with exit code 1.
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pathogen-repo-ci-v0 (ncov)
Process completed with exit code 1.
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test (python=3.10 biopython=1.80 numpy=1.26.4)
Process completed with exit code 1.
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test (python=3.9 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.9 biopython=1.82 numpy=latest)
The operation was canceled.
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test (python=3.12 biopython=latest numpy=1.26.4)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.12 biopython=latest numpy=1.26.4)
The operation was canceled.
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test (python=3.9 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.9 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.10 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.10 biopython=1.80 numpy=latest)
The operation was canceled.
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test (python=3.10 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.10 biopython=1.82 numpy=latest)
The operation was canceled.
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test (python=3.10 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.10 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.10 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.10 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.11 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.11 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.11 biopython=1.80 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.11 biopython=1.80 numpy=latest)
The operation was canceled.
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test (python=3.12 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.12 biopython=1.85 numpy=latest)
The operation was canceled.
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test (python=3.11 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.11 biopython=1.82 numpy=latest)
The operation was canceled.
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test (python=3.12 biopython=1.82 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.12 biopython=1.82 numpy=latest)
The operation was canceled.
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test (python=3.13 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.13 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.12 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.12 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.11 biopython=latest numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.11 biopython=latest numpy=latest)
The operation was canceled.
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test (python=3.13 biopython=1.85 numpy=latest)
The strategy configuration was canceled because "pytest-cram._3_10_1_80_1_26_4" failed
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test (python=3.13 biopython=1.85 numpy=latest)
The operation was canceled.
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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output-avian-flu
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98.3 KB |
sha256:2f30bfdafea32b862c3d960b0eef38331adda0158f2966c557f0b55ff7696c0b
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output-dengue
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436 KB |
sha256:2d74b6273b5853495e5c8bb614092a8aefc6aa4e1adf1ad3e0b313f2171e0138
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output-lassa
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369 KB |
sha256:0a1543eeba337850296792f5363383ebf4516aa2b4499a8118b70173baa7e7f7
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output-measles
|
3.92 MB |
sha256:6758ffce4ec30e161973b910dcc1a6a2631f863a1205c416889cf6575069616c
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output-mpox
|
14.4 MB |
sha256:5caca38f418ef6b83caf4d075cc808ea0575a7dd65bf21c75bd4d97f5271dc8c
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output-mumps
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379 KB |
sha256:8805feee07bf7bb52e859f4bcb62029a51dcb3f3bdaa26530a0bced8e05fa53f
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output-ncov
|
56.3 KB |
sha256:b44d5a69f2e831101af18ae3ad9d6a98c0f6840dc32a9a81b8bc0d85dd3f9d99
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output-oropouche
|
588 KB |
sha256:b463e8aaf3dadb83a7e4107088ecca822ac7905c61c63e02706616d86fecfc74
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output-rabies
|
5.28 MB |
sha256:a14b1d09b55a9c358d02ef4b544966fbe714ce03799adaf527b97276c206aa4d
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output-rsv
|
1.2 MB |
sha256:99faa3abf717fd823a1960411b62c500f61e00682071ebb587cb08041853ae9b
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output-seasonal-cov
|
2.49 MB |
sha256:4d57b9d2115aa0e672318bf0144b098fa07865580bd72ba56819ccb2ca8297f0
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output-seasonal-flu
|
6.3 KB |
sha256:e94cc5aad048d562a8467a6d0b9b360e3491b676bcc3a7dd0d9653e3e9b02b99
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output-vcf-input-tutorial
|
5.03 MB |
sha256:f483650a1a9f19b6d5e4a620fc78a8c332f87dbe1695bfe3d6e6459bab8854af
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output-wnv
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241 KB |
sha256:1660ced9bc4724fb215a9a92867b2b3a63bcebe282c76f2d7b0890546e60483d
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output-yellow-fever
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2.12 MB |
sha256:d21864f07cd437b01aafc763a09b339f6e81a2e129d9168438140e40e91f4e5b
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output-zika
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807 KB |
sha256:58f18f536f5f3e9a929820f036cd0a63e6e32d7c97573a5fc328b36ef906f6db
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