Bump actions/upload-artifact from 4 to 5 #4030
dependabot[bot]ci.yaml
on: pull_request
Matrix: pytest-cram
mypy
58s
pyright
28s
build-docs
/
build
1m 42s
check-docs
42s
check-subsample-config-schema
48s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
14s
rebuild-docker-image
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
|
191 KB |
sha256:3148d6559f857393039071acfe0ae10b60b87e1403bc2daf2c6b3b749cdc8415
|
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output-avian-flu
|
98.2 KB |
sha256:06e6d0677b308e67572ae4d3def68febd484432b840c209f8c14576e6fdb4349
|
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output-dengue
|
436 KB |
sha256:4147c6615d6b6e515b4d26e0479404442e7840a5c8d0ca2da759010956f2a729
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output-lassa
|
370 KB |
sha256:612f26f90c0c40b91de750a8f405374919b0c646ace48b6ecbd25d48682df7da
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output-measles
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3.91 MB |
sha256:c763a53f867faf306e0c5b30b5fe4b77f6e4c1e7213608e65eaaabfd6bf85215
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output-mpox
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14.4 MB |
sha256:77a0e00c91e3f6c2588ab7a861e4838cbc741b498218a70b43f971175911ef88
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output-mumps
|
378 KB |
sha256:88c3d2ec390d2b4103f2dcc4f0e0ac6524d30e9ac36e554be0d366c541094d1f
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output-ncov
|
716 KB |
sha256:b47864efa3d1d6a933760dc38a8ef3475b1e707199a5f400b36789ed8aa0a5ec
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output-oropouche
|
588 KB |
sha256:361ffe9e51422beb939348b596983409d4988b57efec2ec9f83f7899167a766d
|
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output-rabies
|
5.28 MB |
sha256:12bd7b8553793d8e09fd47e5726d8ea05eeff1f4074de31e6246035afa41ff16
|
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output-rsv
|
1.2 MB |
sha256:473d38fd3907de6495e4bd7e93d4d2fd2054be99ceee8e6b92cdfcf784334224
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output-seasonal-cov
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2.47 MB |
sha256:fc4e95a9eb8d0e82564c99b8d603a3ef479fa0db3fb519cc302fcce226f56d5b
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output-seasonal-flu
|
60.2 KB |
sha256:4b8d4095065f67efec38894b4b595b5602e74d0271f4532e2296f60d1ed4ad71
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output-vcf-input-tutorial
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5.03 MB |
sha256:18a64cbd26ecef2aa16e86b7ba43f56df5cfa436ea1a9bbb1020ad816fc3d9d9
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output-wnv
|
240 KB |
sha256:875f4d873bb123f7672c90928cb53f156a328fc90e3cdab5de4c10884efd73ce
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output-yellow-fever
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2.14 MB |
sha256:3f10516e67653266dc1e6d6d2744dbdf3f93116551a004fa557bd9f89ce50f9c
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output-zika
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807 KB |
sha256:57522814b8cda170339f673696c71c47c89cf1271b5001b4dd4a8fecf9cfb274
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