Bump actions/download-artifact from 5 to 6 #4031
dependabot[bot]ci.yaml
on: pull_request
Matrix: pytest-cram
mypy
1m 7s
pyright
17s
build-docs
/
build
1m 56s
check-docs
44s
check-subsample-config-schema
44s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
18s
rebuild-docker-image
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-10-27-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
|
191 KB |
sha256:6f84efaddc94ad85ac40e3d7dab91714f5663c34743cd515d6564630dc3318e1
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output-avian-flu
|
98.1 KB |
sha256:eff3f22700272423c7a38bbc4224d9ad34ae1b253b0d3a6f269559a80d97d2d0
|
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output-dengue
|
436 KB |
sha256:cb39241fe46884f876f821265dc315de7adfb3bf045fb2390e4c86310b3bca85
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output-lassa
|
369 KB |
sha256:244f79e9f15d7d22cab2ab7d379dff262e09464f7cc1ec2c2f9400474f599ac5
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output-measles
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3.91 MB |
sha256:9151f4545cd91b9164dc6b0af94421b67bd16feaf91c2843fdca7e546076839c
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output-mpox
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14.4 MB |
sha256:c7f015ddcbf4eb19e871c1874ae565f3d5ceec984c595a4be3473ed9063134c0
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output-mumps
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378 KB |
sha256:4024ac055a89d2722ffe7ed57322214b0c17a75afe8d27fde795384a1aec3f11
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output-ncov
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716 KB |
sha256:ce581040336c56810d45185bba294f8e8a41fcc9bff54a1be931e65e185b3f33
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output-oropouche
|
589 KB |
sha256:ba9aab0bea4ca76f48fd716114e97d8d96c9b9ab6f78bd4a6cd189c1a89cae21
|
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output-rabies
|
5.28 MB |
sha256:3bd4903fb4549dec6e5794688269a7cb73e5606e28942b46ceb521ed78f78bdf
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output-rsv
|
1.2 MB |
sha256:b21c29c7db8b57184edbbd861aed14937af32bd4977425817f1ece0fb0f27d75
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output-seasonal-cov
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2.47 MB |
sha256:337b1443dc5d084b6151caa0b43fe1dec71f43315b890b39bfb6e2fe71cc70b1
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output-seasonal-flu
|
60.3 KB |
sha256:d4af4ff0fe3d8993f5aaec046924db64e142d3d985405d2e7ab509b00bfb808f
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output-vcf-input-tutorial
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5.03 MB |
sha256:2a5c12777f66e7bab53a9ac78cb0fcd547ef396370eb75ed6f7bb18203e495de
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output-wnv
|
241 KB |
sha256:e1bd0bc56601162aae7ca8780a5aef4551e7ebcf88f8e7aa823a581c6eb6bff5
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output-yellow-fever
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2.12 MB |
sha256:4fc56ee7c70793142d431f1618a2ddc16fd8235f42bf19386c41d10f81721254
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output-zika
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807 KB |
sha256:ae4c9f000e4a2bf5490b2049eee605c83db7e2f1794d325775c7d01e6e42b1cc
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