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Address general type issues #4035

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Address general type issues

Address general type issues #4035

Run time

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Job Run time
pyright
25s
mypy
1m 37s
check-docs
48s
test (python=3.9 biopython=1.82 numpy=latest)
16m 21s
check-subsample-config-schema
53s
test (python=3.9 biopython=1.85 numpy=latest)
16m 46s
test (python=3.10 biopython=1.85 numpy=latest)
17m 36s
test (python=3.10 biopython=1.80 numpy=latest)
16m 1s
test (python=3.9 biopython=1.80 numpy=latest)
15m 56s
test (python=3.11 biopython=1.80 numpy=latest)
19m 1s
test (python=3.11 biopython=1.85 numpy=latest)
18m 6s
test (python=3.11 biopython=1.82 numpy=latest)
18m 52s
test (python=3.10 biopython=1.82 numpy=latest)
17m 39s
test (python=3.12 biopython=1.82 numpy=latest)
30m 13s
test (python=3.13 biopython=1.85 numpy=latest)
19m 9s
test (python=3.12 biopython=latest numpy=latest)
30m 52s
test (python=3.13 biopython=latest numpy=latest)
19m 7s
test (python=3.11 biopython=latest numpy=latest)
18m 46s
pathogen-repo-ci-v0 (ncov)
58s
test (python=3.12 biopython=latest numpy=1.26.4)
27m 40s
pathogen-repo-ci-v0 (avian-flu)
1m 3s
test (python=3.10 biopython=1.80 numpy=1.26.4)
16m 48s
test (python=3.10 biopython=latest numpy=latest)
17m 11s
test (python=3.12 biopython=1.85 numpy=latest)
30m 1s
pathogen-repo-ci-v0 (seasonal-flu)
1m 6s
pathogen-repo-ci-v0 (vcf-input-tutorial)
1m 17s
pathogen-repo-ci-v0 (rsv)
1m 23s
pathogen-repo-ci (mumps)
59s
pathogen-repo-ci (lassa)
46s
build-docs / build
1m 39s
pathogen-repo-ci (rabies)
5m 58s
pathogen-repo-ci (mpox)
1m 17s
pathogen-repo-ci (dengue)
1m 30s
pathogen-repo-ci (oropouche)
1m 39s
pathogen-repo-ci (seasonal-cov)
2m 20s
pathogen-repo-ci (measles)
1m 36s
pathogen-repo-ci (wnv)
1m 10s
pathogen-repo-ci (yellow-fever)
4m 14s
pathogen-repo-ci (zika)
1m 21s
codecov
19s
rebuild-docker-image
0s
release
-1s
6h 40m 22s