CI #4047
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
53s
pyright
21s
build-docs
/
build
1m 34s
check-docs
38s
check-subsample-config-schema
44s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
15s
rebuild-docker-image
0s
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-10-31-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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191 KB |
sha256:0e48828a0a8758eb0b0b5912d44956ed31fb72e7aa34f028368cef4912463119
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output-avian-flu
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108 KB |
sha256:2935a50aee61222115a33ba2cb94abee65f27bae26df0fba523bfab97a430f9d
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output-dengue
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436 KB |
sha256:0b077d2e2ce5d54e2d17f099146fbf14505705af2c9d191ca17209aa0cd26f71
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output-lassa
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370 KB |
sha256:d3bee30078d80301c1d03872012f938e846af06a3fb14269479c3284957bec85
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output-measles
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3.89 MB |
sha256:af5658fcf92db95d3efad1c2a0e82dfe9d821541fc266883feeabdbf13f304be
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output-mpox
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14.4 MB |
sha256:96af419ecdba712f1a231b98d0bff9ba525c3a23f148b1c65c94569583397142
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output-mumps
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378 KB |
sha256:b026e7536fe37ba61dea7cb456fb136c86d131b10d563323fd9056c3e0146759
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output-ncov
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717 KB |
sha256:be329fdd8220263addf99dd9c7dd8b9f4e7d3ad7e62708ec003c2b2846cb78ea
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output-oropouche
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588 KB |
sha256:6dc5034b30018f60235c26c2dc365c69a667425f4c1be07cb34af0605cc6aaaa
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output-rabies
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5.28 MB |
sha256:1c781504af10f66f97f08096ae6c3dcafd220cdf6821666c0a989899adacc559
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output-rsv
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1.21 MB |
sha256:80e595a551f71d43a9bff018727088d46714af3e00c0a39a0aebdf1064188501
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output-seasonal-cov
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2.45 MB |
sha256:c5d755ed36a569fc593387d8d58006188c69c1d4edd349cc352e1478223d5772
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output-seasonal-flu
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60.3 KB |
sha256:ab6feecfee2306c048fc6fd139ee01f913ac8243084027d7763a811632a0f1e3
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output-vcf-input-tutorial
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5.03 MB |
sha256:00e62c978b490a147e30362c01c72910442385c8255adaf964302e5d85c50e63
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output-wnv
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242 KB |
sha256:158ba47d8fa8bd9a7005deea6265e21f8160640e2bd2a964f6c80a74bbf6befd
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output-yellow-fever
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2.13 MB |
sha256:5fe1d0d5af348ea67659be0b0eca90267b03ee6b2e5895cc70ae8c80a46a404a
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output-zika
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807 KB |
sha256:472b5965803bb856a418278c327424f4cc467cbd74035d6be7cee79ad24bcb6b
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