CI #4048
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
55s
pyright
16s
build-docs
/
build
1m 34s
check-docs
45s
check-subsample-config-schema
48s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
12s
rebuild-docker-image
0s
Annotations
17 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-11-01-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-11-01-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-11-01-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-11-01-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-11-01-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-11-01-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-11-01-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-11-01-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-11-01-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-11-01-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-11-01-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-11-01-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-11-01-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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191 KB |
sha256:c6a92d079e28748f8b40ddebebbc1bc28186531fca34b4a8d057b0e3e754df90
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output-avian-flu
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108 KB |
sha256:403021db46e9a6e276ca41ab09a59356fac63a49414a7d4fe3dd50bc929264d8
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output-dengue
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436 KB |
sha256:4e38766968affd09400853a8caf5fadff1153faf5dac2ae39cbd6aa9a6c2dff9
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output-lassa
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369 KB |
sha256:209b86124715507c039188699bfec8d592954b02b003144227ab7d3876821384
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output-measles
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3.92 MB |
sha256:61e6e320a77e458b58501a48be8f573b5ec269994fd01077b7b0c669600668f4
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output-mpox
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14.4 MB |
sha256:2a09f1f773bd31ddaf36cc1923fb9985cbe96993c61bdbe94c17efb5bdd2ab11
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output-mumps
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378 KB |
sha256:7e1b42065bc63cafef3743caa00efb458d7a49c8acb681fd5fb896d71d8eac2c
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output-ncov
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713 KB |
sha256:7dcf8dae46258ef9888e59cacf6577dc677a6271fca8f8b0f3e8b04739a72902
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output-oropouche
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588 KB |
sha256:1d406e13a98d83d94c4e8c6139ae84c819e066753fe9f07871a0aebf2f0d56a7
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output-rabies
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5.28 MB |
sha256:62599eee29c8fc1f767f5e614b9a6759dd6a0d8e313af9c2b71b415e6ab02a7e
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output-rsv
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1.21 MB |
sha256:b68ba74a583d5e2df949e4548aed95c456dd30026a18eef49ee78006b312e4b2
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output-seasonal-cov
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2.47 MB |
sha256:de2e20472d42a31a4db38152c64b6dd036ff720943d436786ffcdf49ed433632
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output-seasonal-flu
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60.2 KB |
sha256:71c831002b0f4dc139bd09ff7dac7e6e82bf52cc2b0dfd8c655b99d25b1a84f0
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output-vcf-input-tutorial
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5.03 MB |
sha256:15ae71e08ee683c00e08e01a2e6a697f277692f6b16122168e851e3eadeaab3c
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output-wnv
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241 KB |
sha256:ef8f9c655e70fea7c7e134b0ced163eb3302340f9094614d8cab5595819c1092
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output-yellow-fever
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2.11 MB |
sha256:f490879f801a6ebc3984496767a3d61e0e091ad3a1f92723429a35337d64bd3c
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output-zika
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807 KB |
sha256:9ea0aedd55a0ea1f1d2e3eac7641523f54c2a42cc9a79246ca16667d120468ed
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