CI #4049
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
51s
pyright
26s
build-docs
/
build
1m 31s
check-docs
42s
check-subsample-config-schema
46s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
16s
rebuild-docker-image
0s
Annotations
2 errors and 19 warnings
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pathogen-repo-ci (seasonal-cov)
Process completed with exit code 1.
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pathogen-repo-ci (seasonal-cov)
Process completed with exit code 1.
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-11-02-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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191 KB |
sha256:25ebb52cceed067a181a9a1f301985bde2d95abb09340c46fe023fe0eda3e13e
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output-avian-flu
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108 KB |
sha256:f732405facab5fb36f512ef0441f65f3ffc0c791ac4a402b544da43b8b27466a
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output-dengue
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436 KB |
sha256:29d7eb125407424299aab9eb07d1113307ddb682a07022e350344d7f25680020
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output-lassa
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370 KB |
sha256:ce9e269f6cee82281cb43ebe610c9aa29c11b73f1ccc385ff8684dfc717c41f3
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output-measles
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3.91 MB |
sha256:c66d811531fba733c3609035bd29764492996273fa3835ba3292b90fcc8dc483
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output-mpox
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14.4 MB |
sha256:43ecb4e9a568ffaeee34a3914cdf6e3b8e429bfbc3837a5baa3f18bce4bbb94a
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output-mumps
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379 KB |
sha256:cd4773256c6439ef99d79f66dd4e806d41cb14523ec194e244aa2079245a763b
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output-ncov
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719 KB |
sha256:83e9633b192b474016cb8aab37bf03d48bb1c97ca82632fe1ce11821ed6218d6
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output-oropouche
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588 KB |
sha256:0a61613f3c547724adf0a4d12b6385d3296252899e0d3ab618c90f662a10b9de
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output-rabies
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5.28 MB |
sha256:8b51463ac5cd04e307f4c5aaad409844c62798c377e0770f50145eeaacdcf4bb
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output-rsv
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1.21 MB |
sha256:7228fde85667f43059ce93783e6bde905af79fa4f6b3802dd58e5e5515e62513
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output-seasonal-cov
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1.72 MB |
sha256:f553fd83476002085d6c1e1c982c7e0cc85696f487aba044b5d19bfe2464d93b
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output-seasonal-flu
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60.2 KB |
sha256:1d896a7c0123fc667df818de2b485e09a392bfe8c5a1bfc07694209625ca7e6a
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output-vcf-input-tutorial
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5.03 MB |
sha256:679babc04e20908450cd7f957eeb0e473f8329f2f97f2f7741e2000a706ae47b
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output-wnv
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242 KB |
sha256:9bb22688455e98f5dbc28909e029e22df42a858ca84aa40b997e8223cc17304a
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output-yellow-fever
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2.14 MB |
sha256:1d615ecf8948171da0b1da7c19fd19815d6a2debfa43775cb166ca4a0318f284
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output-zika
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808 KB |
sha256:25df7edaa8b32f0f9543920fec119cd9800e7e76efb1e670a66b75cd37f03224
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