CI #4051
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
49s
pyright
28s
build-docs
/
build
1m 36s
check-docs
41s
check-subsample-config-schema
47s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
18s
rebuild-docker-image
0s
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-11-04-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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191 KB |
sha256:d7e481f7be6a7a67ce6413c1c20644e03cf1660e3bb6e76d7c4b7e597d7644c3
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output-avian-flu
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108 KB |
sha256:c422b2cdf0bf439fa4488f8d0864068ee042659367fea0caa213709d9c968c11
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output-dengue
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436 KB |
sha256:9cfc2a3e0f0ed1c0c88585e4c6b2053639a43f119e3ce6cc4f32900f7295ef01
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output-lassa
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369 KB |
sha256:00612cb09ae4448da86537997401ac5e64fe301d8e1a2b09915159bc7f4c503c
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output-measles
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3.91 MB |
sha256:d7cadbc966ef0f408e28a2fbf39905204d6da003c5e2f3fe167dbc820742fc0a
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output-mpox
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14.4 MB |
sha256:9b047edb96318449702dc8365540f90b95ff8fec6bf9b7816dbf10945c4e63d9
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output-mumps
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378 KB |
sha256:0d1cf7cd3e2bf260c7777bc5d4843fea1b98d5d001750d1c5e5ffed4d886d0f9
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output-ncov
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713 KB |
sha256:4cd64cd4c6aaedb767360ab85e54c474e4c7546438e640f544a8ac8e76a8eecf
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output-oropouche
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588 KB |
sha256:b42540bd4979b3615d26306d392c68577805a5ccbbbe133fc658c7b6ef1ed9af
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output-rabies
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5.28 MB |
sha256:d8a84e911bf14575f42ab786293efa08916c7dd62a9cd13f7cdf58a9dcfe66f0
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output-rsv
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1.21 MB |
sha256:32e4271e19297a9ff05dc3bacc9979c824162617a591a0f95aef2ac7c65b9761
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output-seasonal-cov
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2.5 MB |
sha256:06656fa386dbe72acbad9d0ef0c628e7e80689e596cd548459cd45ae48dba4f0
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output-seasonal-flu
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60.2 KB |
sha256:0f5ff4f822687ffafda9a007fecc923b9d1afbe1f0f7f1b12d267cb9f05d223f
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output-vcf-input-tutorial
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5.03 MB |
sha256:f36171c3891bd82ab3d078ae637fb530fb81b22ab702e99120e0fae83ef7f5b6
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output-wnv
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241 KB |
sha256:0c4cf9bda6322d71b57c206c4e3b2a25df5841511b9eef91501510fdc4fac38c
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output-yellow-fever
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2.11 MB |
sha256:3e378b6ff086b288fe9572dad915b90b8f269ff84e79ae3288e1d29ac5290465
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output-zika
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807 KB |
sha256:2f110c3b4e2f0938e2c4ad2a1d005105640abdfe12a5d82fa04d6597f56b9368
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