CI #4057
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
53s
pyright
22s
build-docs
/
build
1m 34s
check-docs
44s
check-subsample-config-schema
45s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
19s
rebuild-docker-image
0s
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-11-05-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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190 KB |
sha256:1833569c3575f06cfc008870e1b8bb8e831d0d46e3c379f7397f0724ae41552a
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output-avian-flu
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108 KB |
sha256:7c79a1e4513c03e295d3dcc5ff34fccd2734c2b9b2a00fb11589f4fecffa7efb
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output-dengue
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436 KB |
sha256:b80cf652952f6929dc0ba8f6a8b6369d6d2ab7d1ec819ab86e4d888835b6a34e
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output-lassa
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369 KB |
sha256:c452ae44acf5deb729643a755fec6bcc02bd2f28f9b8825b0847d1be4f5de0dd
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output-measles
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3.91 MB |
sha256:55c99e6b75023ce3d96a2356fb0462b8172bc1f812f8ff59b1eaef7c3d6a97ca
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output-mpox
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14.4 MB |
sha256:082db6ea9a6f3e2052884381f114703894d953a2dd591da0b1ce4dc3de0b6fc4
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output-mumps
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378 KB |
sha256:90ab412ad4c44d075a35f98241280c77fc06235ad431ff04bd6f18a2bcf1e8ee
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output-ncov
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722 KB |
sha256:707bffd2fac586563e64de55f072b501e4ec1d1d9a3424c27827e1c08c5a39e2
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output-oropouche
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588 KB |
sha256:442beb56f9e3a27dc8a62da97b065b05fc2f01b31c016b2738e08350bb6ecf63
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output-rabies
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5.28 MB |
sha256:a6f4a478626cbc605118b40ec0bde7db6aa5c8c5b7b53e5e4795313b4a2259d7
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output-rsv
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1.21 MB |
sha256:693d710d170b8edfc8025a3258b53beb977a6faa9ead62e16d895397d40bc11a
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output-seasonal-cov
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2.5 MB |
sha256:d87998dd648f7bab4b9c2d48ea4f1760ab65d89bf628322d0d05589b77bf8ec2
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output-seasonal-flu
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60.4 KB |
sha256:dd2078020a40d453b0b847fc06d8a206e00a9b181e0f89db0d5e86e53610f6c7
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output-vcf-input-tutorial
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5.03 MB |
sha256:b5276e8208674bf2f5e17f5183f23a6f2445cdb9e194b8ba0e59de5f52fb6f89
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output-wnv
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242 KB |
sha256:560aad7604c02eeaddd4730111a3e2614392905f907481095b6458ef7396cdde
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output-yellow-fever
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2.12 MB |
sha256:f119544c43eab4b200d4a1cd6a2c54f541e9e31205907bf29b58275d04d85d85
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output-zika
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807 KB |
sha256:7d4cd60b6b018c0cccc2b1bda0b1f6800a666f30a95a1a117032749e5df41f63
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