CI #4058
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
53s
pyright
18s
build-docs
/
build
1m 40s
check-docs
44s
check-subsample-config-schema
43s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
11s
rebuild-docker-image
0s
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-11-06-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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190 KB |
sha256:60f8eb83bf8fc5f8b5d5b6dcd73c98358c15169c2e3a892ebc6f559137ae78db
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output-avian-flu
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108 KB |
sha256:e44472925454be09ecb016e3c16ea86d3991ca8cc9b55fd7cb59692556fb9474
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output-dengue
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436 KB |
sha256:b09ce795e15d97ef94c7fa52b537d28a2b8d538d0d3ee416fe290c7f08861408
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output-lassa
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369 KB |
sha256:e149babd5ea04426a8260ee23bc9fd0977f47c5d261041bc1893dcc546333941
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output-measles
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3.9 MB |
sha256:fe552e9cf643e8faafc61f034d27da751cb8a23d1e9f2b178d25d1ce0b380d61
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output-mpox
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14.4 MB |
sha256:57c2a41e1ccee997b5a51dd07bafac59f0ba4e93c73ccc01fe7b9c33fa385ab2
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output-mumps
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380 KB |
sha256:0357d844a0604ce4f5b11f98ba68acbda4944f3ed03f78fce3dcd1f8bab01e91
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output-ncov
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714 KB |
sha256:5b1b544722de0769ba0e26975501df4cc8ac8e8a30185e5637d8b526ed058ee2
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output-oropouche
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588 KB |
sha256:6e0844c977f9aac9f8c59fc9f8f72a5a0cc9aac724c3b210776f549a16435d2e
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output-rabies
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5.28 MB |
sha256:a28f083419b2ae49813c1f269655b87a7518fa55aebeea22f0241abd926f5a13
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output-rsv
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1.21 MB |
sha256:43bcc378794397a5e31653b5f7347b1bb331a4cd3d888e2bfe5a0a145d39ab25
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output-seasonal-cov
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2.47 MB |
sha256:b01b4e59365a064a194c0ae590386061aef7ea4b25d981951c8be389d5b9b150
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output-seasonal-flu
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60.2 KB |
sha256:08505d22484b8f4ac3c68568471d1e98ee3fda5f2deffad6e8250fc07efd7f4e
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output-vcf-input-tutorial
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5.03 MB |
sha256:91f85e1ef764fceeccc093cd03a9ef85630eb8ec84b143e109cc3da2710c019c
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output-wnv
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241 KB |
sha256:4cfe719aae44a2fccd90f6ec7b9fe6f54aa7975cb83d9a60b80e8a8f55631f20
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output-yellow-fever
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2.12 MB |
sha256:0414383c38b4589ac1f0267c75323873fe0064e5c1c4f9ee96f48576a136af3b
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output-zika
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807 KB |
sha256:a7fd020d58a4c675f46cd0233df6cd9c0aebb535a790672befddb7bd867ebdbd
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