CI #4059
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
1m 0s
pyright
23s
build-docs
/
build
1m 43s
check-docs
42s
check-subsample-config-schema
56s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
16s
rebuild-docker-image
0s
Annotations
1 error and 18 warnings
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pathogen-repo-ci-v0 (avian-flu)
Process completed with exit code 1.
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-11-07-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-11-07-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-11-07-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-11-07-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-11-07-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-11-07-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-11-07-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-11-07-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-11-07-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-11-07-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-11-07-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-11-07-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-11-07-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-11-07-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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190 KB |
sha256:1853b26d99cb08737d5f0e6c5be218b25b2f44f0c9c6c4beb3d9b9ea4e72453f
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output-avian-flu
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45.1 KB |
sha256:82eae57a74d0f37c75c01e6b742ea8b78b81d49df144910201796924984de40b
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output-dengue
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435 KB |
sha256:fad8fc0c37869deb7eab021993a803eeb69b979295b614ba309f1f1d175c5cb9
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output-lassa
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369 KB |
sha256:3f5d869d679e6d1c6818e04522585e75ece703d15bb2b09f5e75200c7bc8bc77
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output-measles
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3.91 MB |
sha256:94750a453ea6f9aac3aca117dc3dcc21fc1774d992d7291bb1685f91226454ce
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output-mpox
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14.4 MB |
sha256:76bbfce0cb9649730b61dff1954ae8fce8a13c96d3fcdcbfc3c4278297737314
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output-mumps
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379 KB |
sha256:1a39409f5b5c3a8e13e34cb15301a27fa879b171fc7e0dcfd7e393f432e845c7
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output-ncov
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716 KB |
sha256:19d09de14d15e8b5ee3f9a1723b4bebe60894718dac8dedf683267895b805be5
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output-oropouche
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588 KB |
sha256:430ded9118848a31de36fe69a241d07782ba8bb967c42a86c2885cc565a35be3
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output-rabies
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5.29 MB |
sha256:0d69c1bee34638fd1874c10ad618b24decfde06318b214ac0a3ac0e5d4282dc9
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output-rsv
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1.21 MB |
sha256:89552fb6ab82f5d62a0facf2e2c15d7bc3f0d7aa75c7deec6e5218565cc1fd1b
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output-seasonal-cov
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2.48 MB |
sha256:07feca260b4b6c1e1942fbb51321f9cf2bd0aa770d48a403dfc32d08bfbae08c
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output-seasonal-flu
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60.3 KB |
sha256:33458807a9cc908035bf850a47fb10d5c4a4b1b6cf6f6d80270d9f2c58ed2265
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output-vcf-input-tutorial
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5.03 MB |
sha256:38178711f82a71275986563c768db748d9eae4eae0fbde9486ad91b2eea86996
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output-wnv
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241 KB |
sha256:99e3bc66f3e2135c535df43db8a2eaf3113da9b9d6c5e606f5b7479b4a9b5e2d
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output-yellow-fever
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2.11 MB |
sha256:af994482868278be00bb32a06c4b9ab3fac6e4c903cff6c7b8bc4e7a540a2e18
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output-zika
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838 KB |
sha256:c5281a83883fe4b641f769410617129cd2568d088427fbd3bc401afb66b88cb4
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