CI #4061
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
53s
pyright
19s
build-docs
/
build
1m 35s
check-docs
47s
check-subsample-config-schema
47s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
12s
rebuild-docker-image
0s
Annotations
2 errors and 19 warnings
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pathogen-repo-ci (oropouche)
Process completed with exit code 1.
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pathogen-repo-ci (oropouche)
Process completed with exit code 1.
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-11-09-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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190 KB |
sha256:b1a30305644942fda2a3bb5d76cc1d3cab78ced0a46170d8b0390f0af40a2713
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output-avian-flu
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108 KB |
sha256:e7c8156f21c439b8bfb8afcb9d0f46b0f70e773005a2c9f62c3590c9a814bb72
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output-dengue
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436 KB |
sha256:507233e79397fc73489c765343553e2f347e6e90705a5c6976e5dc11c57abd8b
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output-lassa
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369 KB |
sha256:4e3ac06c1cbd086d028c4b837d54669fd980b134c839a8d076a2f085d6a5b21d
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output-measles
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3.93 MB |
sha256:927bd56568eef2476e173e9cec56c2a00ba3952a83e82b320ccdb7076ff7d304
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output-mpox
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14.4 MB |
sha256:be0e75930b84a228d0f4fc48a0deeb37f0d14316ceba982ba12b00c66228b5c5
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output-mumps
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378 KB |
sha256:62f6ea07c92100571179edf3ca01d68b0145f381f95008b60f924a0c333b7973
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output-ncov
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717 KB |
sha256:1537f47025f106e77bf8b1d048744aed0995b940d5236fe0c809d279bbe5edbc
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output-oropouche
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235 KB |
sha256:18a66acf5d0a720321e1cb30d67008c928faf07c0eb90846dc4736fdb80e446a
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output-rabies
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5.29 MB |
sha256:35cc10b0a2d9a444d85b0e0be6418e4ee522170ffeed00bb961c51215e71feca
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output-rsv
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1.21 MB |
sha256:1c7dc836e457fbac60b613e69206066ffeae5c5e6e270cc667dba466880dabdb
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output-seasonal-cov
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2.46 MB |
sha256:bbc85f5f3c54ed0d537bd478902e30198bfdb07670f0e90e3369ab120b3918b6
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output-seasonal-flu
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60.3 KB |
sha256:79ad22b21091add149d7eae75efa1b72d37ef95fa215156849a93bb9b3acf529
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output-vcf-input-tutorial
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5.03 MB |
sha256:c70b67f8d16f1e119d70b9b0ed0a9ced36f0ce825f83c9b90316c74cc001be0f
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output-wnv
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241 KB |
sha256:5237ee266d3f89c7099f47c2213352019a1a6f1db6ce36adde0f4069a75c86d0
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output-yellow-fever
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2.13 MB |
sha256:c93213de4a47f55a831b7264729989411086532fbdf857830a0dfdb848c24f17
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output-zika
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838 KB |
sha256:d407a269f2e954a5dae10533c54ff9b6a08fc3f21211bf777f395d891bedaa55
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