CI #4062
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
52s
pyright
20s
build-docs
/
build
1m 35s
check-docs
46s
check-subsample-config-schema
42s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
14s
rebuild-docker-image
0s
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-11-10-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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190 KB |
sha256:d448cf4b02b2fff631b0137373b9944b737f3f098aca0fa796e13cf3e5f27626
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output-avian-flu
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108 KB |
sha256:d300d46ea3898cffd4e7b478c7ecec5abd8d98fd638414454843b84c9b357bb3
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output-dengue
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436 KB |
sha256:fe830b40459ebb5761b3e88f9f12b854ea969dfc89fe954580456ec656e3874c
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output-lassa
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370 KB |
sha256:191849f9137d029df4e6589642a1924e9952e28375608ba95dc3f9c6ec8311e3
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output-measles
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3.9 MB |
sha256:d574326967e1934ec04a0e927678ea48d5637d5279f299bd5b74f409d92e858c
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output-mpox
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14.4 MB |
sha256:58122622dab2605728e15044707bb5e4934a6afba411d0e4918fb455a8086a8c
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output-mumps
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378 KB |
sha256:d39f3fd3672a2fbbf1408338f11c58f06c9e40876f5d90ba0af63b3e2fb87b9d
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output-ncov
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716 KB |
sha256:9f6fb45533bc5aa9795d9f78b12ae7fbe05724cf8e3459b07e2f5f56aafeca6a
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output-oropouche
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588 KB |
sha256:8796392f56d03a13be7747045ed1937d7f358877f87c82dc4dc6230a5f501ebc
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output-rabies
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5.29 MB |
sha256:ef43e6f974aed8d2ca8330365eb5c5c38f9d5a0dc8239a5f72f844d4c4693053
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output-rsv
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1.21 MB |
sha256:fb346877e9937ad487e88829d6b75ce53b03e4e99819af333d54ece09ae2b9f2
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output-seasonal-cov
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2.48 MB |
sha256:632b47876082c2965c48121c81e74df3ed3034700bac3e547278f61f39ac9b33
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output-seasonal-flu
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60.3 KB |
sha256:f9b71c1c8555751541060b7c41e30fa3471d307d394bc778c78768d33845beb2
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output-vcf-input-tutorial
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5.03 MB |
sha256:ba59a8f7e42f9d857bb00757dd402701435b3690ecd9562bacee53afb7b483b7
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output-wnv
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241 KB |
sha256:b762d3cacd2949142099f0cf557663c7ab7fcf268fe6e896d4c743353d46ad4a
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output-yellow-fever
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2.14 MB |
sha256:53d8cd5a546ef827b3dd91c99945affcfc268213892ac01b665d37f4cd2e21f7
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output-zika
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838 KB |
sha256:1d5441511b334cffbf9ceb19ef3db1482557bbf5b9d28cdeb02fae1078c3c155
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