CI #4065
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
51s
pyright
21s
build-docs
/
build
1m 35s
check-docs
41s
check-subsample-config-schema
42s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
17s
rebuild-docker-image
0s
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-11-13-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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190 KB |
sha256:268a33a11672f35aa416d604d18f5ab00c123c63aa83064848cf6a3a78b3dd99
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output-avian-flu
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108 KB |
sha256:74951e9ee42f51802d617f355ccbe1c4b44914049ac61bc14316900bff457d59
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output-dengue
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437 KB |
sha256:65f50cbc05969dfb695e0e7fb975e9e8fd7d0add7b8893d9e0ab6b1814980810
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output-lassa
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369 KB |
sha256:aef529346b9921c4ed08b52b220c1d6a7eb017660d8cdfc0d1744e0fdd5187c7
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output-measles
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3.92 MB |
sha256:3efa946261b068c0067d86dc12e140bbc4a7632d3bb2e147c930d221a8d5dea3
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output-mpox
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23.1 MB |
sha256:86e4e79c92a4510110b5e880ad88403e331443503780d2c5238d27e898dabf9b
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output-mumps
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378 KB |
sha256:1fe0522f4c17b9de6caef915970c7867e717d9a7df2646df2facda4d3f0bd25f
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output-ncov
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711 KB |
sha256:6207f03f0acfb5b554b84826e0404a069864ab71f3228e36b334e259ef6b490a
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output-oropouche
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588 KB |
sha256:32788a7a9aa6b61377df41cf27a5c798136048ddbbe24064908f18f6d465cf2d
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output-rabies
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5.3 MB |
sha256:5403464b89bf0295e4fc9beafc4ac60967601afae2f0943c7fb295832100f22a
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output-rsv
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1.21 MB |
sha256:ba1b3b19dd38caa13488584c194f4486c8396388c14ceb9dc7e9beaf6f550660
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output-seasonal-cov
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2.48 MB |
sha256:45e99d60238e0ee1c65f509550d98563a8ef7b68c8d47d957302a491b9308c6f
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output-seasonal-flu
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60.3 KB |
sha256:dad96a7dd482287b6fcc6c6a44edb3783880566fa6fc429f40c9a2c0caa918f4
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output-vcf-input-tutorial
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5.03 MB |
sha256:640d79324c217c36a229ed5e0b47b6b816532c7e34cc2045d3668674183c0ca2
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output-wnv
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241 KB |
sha256:f39a27fc4d86daec579ea502fda3d7e5c958bf231f670cc5b8a0da85e32f7302
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output-yellow-fever
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2.12 MB |
sha256:03a320721fe6ce2305f627de666282ba81c7f2137f5b5d8c84ebb183211e5ad9
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output-zika
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838 KB |
sha256:2d8a01a1a62216500c54bb2019a4f2dc25262a9885b70e570b7f6495b07fd1cc
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