CI #4067
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
48s
pyright
19s
build-docs
/
build
1m 36s
check-docs
41s
check-subsample-config-schema
42s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
15s
rebuild-docker-image
0s
Annotations
20 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (oropouche)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-11-15-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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190 KB |
sha256:7bfdf22cc47e3b39633eb8c1bd4f930597eff84c2b9d7ee714c58c4310285c30
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output-avian-flu
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108 KB |
sha256:969314665c2466d9ee7e1051726752c7292b856d80cc73901f05c190ce078db1
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output-dengue
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435 KB |
sha256:a196ea8a73e2db70ac34a7148b74739654b4e5e0bc5bfa52e2c6b67c9d08670e
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output-lassa
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369 KB |
sha256:ea96b35a0a217b108c06fd0780c2de2b24ff008728afd2f7c07d3cab815815b1
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output-measles
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3.92 MB |
sha256:f79f0589a23b62c641ce0473c84adbe9cd337d3c0702b1dceb6afbf4e5e9d544
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output-mpox
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23.1 MB |
sha256:1e392e98d0c7ab94647848ec3e40281d6c0907dc2aec51007fe323554551ee7a
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output-mumps
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378 KB |
sha256:86e8c95fe6f5628d485e20e32d5cc679f344b4289015ef471baafc9bb98198ff
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output-ncov
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709 KB |
sha256:c9ede384516463fae018433ea8f9d5ed603b207e9b5e70cdfe0df2f7900b0c8b
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output-oropouche
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588 KB |
sha256:67959d34f23833b533bb33e2c27769b5c23ef6ec1372b4ff1be86d2aebd35513
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output-rabies
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5.3 MB |
sha256:39dba3219a060ddb536d4d62b0c68d1f67cb1fd2aada3ba2c710a278f2b055be
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output-rsv
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1.21 MB |
sha256:bb7d4d0badd47fae8760400f6ad930f63d2cbe96b4cab2b3d0a91a9e01549568
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output-seasonal-cov
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2.5 MB |
sha256:ca13ce4068850a6e4bae0bbe8820c70d96cc6d5557d28a8b5304c492e194defa
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output-seasonal-flu
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60.2 KB |
sha256:010767bb6de95fb54c870ba8a8932b938599093aabd9eecd744ace14fcbc447e
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output-vcf-input-tutorial
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5.03 MB |
sha256:14ebaaa557f8c6724c32b626245b92653707748b8717fa7c5d48ca366d9b1294
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output-wnv
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241 KB |
sha256:3b768aa7ba8b80e8bc47cb94065e9d5c38539f6fbe5a690f43945be71a6340da
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output-yellow-fever
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2.13 MB |
sha256:1746b977acec8ac40cd4aa1b9cadcdf1a8440afd3ffadd64bcae4d3ac69c7b48
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output-zika
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838 KB |
sha256:b1db7ae639fa4639f5ee54411bb87bcfd9c8ee600858357a6bc7f98269cd389c
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