CI #4068
corneliusroemerci.yaml
on: schedule
Matrix: pytest-cram
mypy
53s
pyright
17s
build-docs
/
build
1m 35s
check-docs
43s
check-subsample-config-schema
46s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
14s
rebuild-docker-image
0s
Annotations
19 warnings
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-subsample-config-schema
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mumps)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (wnv)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci-v0 (vcf-input-tutorial)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (yellow-fever)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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pathogen-repo-ci (rabies)
Failed to save: Unable to reserve cache with key 2025-11-16-linux-64-augur-args-30d39f4-root-dcc80ee-bin-7f980036a54bf9b731e96423dab2167633dab2652673dc4fef598b730ac364cb, another job may be creating this cache.
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | Digest | |
|---|---|---|---|
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coverage
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190 KB |
sha256:baa027eb7328b7607d018d0c7cddb9dc4994685c865697dac305284fd167827c
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output-avian-flu
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108 KB |
sha256:31dd0c14075ba03b6df8b1796eefb557f893fa32058d05f664d86a9b080dbe51
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output-dengue
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436 KB |
sha256:12361d4238dab022952087eb75a14107d8765133594df9a44a35ea6c306db565
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output-lassa
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369 KB |
sha256:c5afd74561318097569f28d9f3917eadc3a3398ced6d8c151b93bad03b095c90
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output-measles
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3.9 MB |
sha256:c50e7e6c05cc53f0617038d7986f15fea6d0e53f585ad47bb5b3432798e5edf5
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output-mpox
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23.1 MB |
sha256:f7fe59ac5bec2ba5e85520d4fda4a42886477eb47a7ab4da3799d0bd048e88ee
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output-mumps
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378 KB |
sha256:68b0c695e5b95f1a26d5efcbce891a57d2ed996adb5063d73519d98c7b6bb287
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output-ncov
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722 KB |
sha256:5edd583a382aaa187f09f1e2e88368d89d0a6ce479158645163c7417cd8a7834
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output-oropouche
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588 KB |
sha256:e4321feac30f84a7dbc2a9f9497a2035a2df19e8a14cddf24fc65d3bb29e7f06
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output-rabies
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5.3 MB |
sha256:6982f40055d7f26428e359672530f0beb70c4964a614a1172a359655dc626cf8
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output-rsv
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1.21 MB |
sha256:8e6e0fe57a2443cda0508ba398e50413652927b1774920e585b35e3304719894
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output-seasonal-cov
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2.45 MB |
sha256:67ae50ea450fb2c4fe0359bc0fea63c05fa6e58f0c93b29d09c581ba6345ffee
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output-seasonal-flu
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60.3 KB |
sha256:07742a8ba60cca1fa67374fa61f9c217f9fa42065da808d1b652f24a4b865c85
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output-vcf-input-tutorial
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5.03 MB |
sha256:f60b9ea4d63b19350d9067e910d1da7cdda6d57495a9a747b2337d0a10b13ce7
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output-wnv
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241 KB |
sha256:26ab7b588195ce13ed7fa21363edd90573e3a4bfc02f7b10d29361f990d49fb1
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output-yellow-fever
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2.12 MB |
sha256:e4f08cbf41977d1d8f3844a72cecb3aecfbb36ce01eca53c6c13cc22bd00446c
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output-zika
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838 KB |
sha256:32c62f04267081cb201952399da741225d1324daa479274ca61a08c7a4714741
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