These release notes are automatically extracted from the full changelog.
Features
- ancestral, translate: Add
--skip-validation
as an alias to--validation-mode=skip
. #1656 (@victorlin) - clades: Allow customizing the validation of input node data JSON files with
--validation-mode
and--skip-validation
. #1656 (@victorlin) - tree: When using iqtree, check for all synonyms of default args when detecting potential conflicts, e.g.
--threads-max
is equivalent to-ntmax
. Previously, we were only checking for the latter. Also use new, preferred IQtree2 option names (e.g.--polytomy
instead of-czb
etc.). #1547 (@corneliusroemer)
Bug Fixes
- index: Previously specifying a directory that does not exist in the path to
--output
would result in an incorrect error stating that the input file does not exist. It now shows the correct path responsible for the error. #1644 (@victorlin) - curate format-dates: Update help docs and improve failure messages to show use of
--expected-date-formats
. #1653 (@joverlee521)