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Genome info file in output/summary_tables/ corrupted (genome-index.gz)

bugSomething isn't workingSomething isn't working

Status: Open.

#116 In nf-core/magmap;

· geweaa opened on Jun 24, 2025

No default behavior NCBI genome info

bugSomething isn't workingSomething isn't working

Status: Open.

#113 In nf-core/magmap;

· geweaa opened on Jun 2, 2025

Store prokka output in a user-definable directory

enhancementNew feature or requestNew feature or request

Status: Open.

#110 In nf-core/magmap;

· erikrikarddaniel opened on Apr 25, 2025

· 

nf-core candidate 1.0 release

Genome info csv must not contain symlinks

bugSomething isn't workingSomething isn't working

Status: Open.

#109 In nf-core/magmap;

· erikrikarddaniel opened on Apr 2, 2025

· 

nf-core candidate 1.0 release

Broken links stop the pipeline

bugSomething isn't workingSomething isn't working

Status: Open.

#90 In nf-core/magmap;

· danilodileo opened on Oct 21, 2024

· 

nf-core candidate 1.0 release

Redirect the genomes staged in sourmash subworkflow to a directory

enhancementNew feature or requestNew feature or request

Status: Open.

#88 In nf-core/magmap;

· danilodileo opened on Oct 16, 2024

· 

nf-core candidate 1.0 release

Allow user to avoid some steps in the pipeline when having a concatenated file ready

enhancementNew feature or requestNew feature or request

Status: Open.

#87 In nf-core/magmap;

· danilodileo opened on Oct 16, 2024

· 

Magmap 1.0.1

Scan genomes with hmm profiles like in metatdenovo

enhancementNew feature or requestNew feature or request

Status: Open.

#34 In nf-core/magmap;

· erikrikarddaniel opened on Nov 16, 2023