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    213 repositories

    • ensembl-production-metazoa

      Public
      Metazoan production helper library and script to import ad-hoc annotations.
      Shell
      •
      Apache License 2.0
      •1•1•0•0•Updated Jun 20, 2025Jun 20, 2025

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •4•15•0•1•Updated Jun 20, 2025Jun 20, 2025

    • ensembl-genes-metadata

      Public
      Perl
      •
      Apache License 2.0
      •0•1•2•1•Updated Jun 20, 2025Jun 20, 2025

    • ensembl-web-metadata-api

      Public
      Metadata API for beta.ensembl.org
      Python
      •
      Apache License 2.0
      •0•0•0•2•Updated Jun 20, 2025Jun 20, 2025

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •9•9•0•2•Updated Jun 20, 2025Jun 20, 2025

    • ensembl-genes

      Public
      Python Ensembl Gene Annotation code source repository
      Python
      •
      Apache License 2.0
      •3•4•0•1•Updated Jun 20, 2025Jun 20, 2025

    • ensembl-datacheck

      Public
      Code for checking Ensembl databases during release production
      Perl
      •
      Apache License 2.0
      •30•5•0•2•Updated Jun 20, 2025Jun 20, 2025

    • ensembl-genes-nf

      Public
      Ensembl Genebuild NextFlow pipelines
      Nextflow
      •
      Apache License 2.0
      •5•2•0•1•Updated Jun 20, 2025Jun 20, 2025

    • ensembl-variation-pipelines

      Public
      Python
      •
      Apache License 2.0
      •2•0•0•6•Updated Jun 19, 2025Jun 19, 2025

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformaticsdatabasecomparative-genomicsperlensembl
      Perl
      •
      Apache License 2.0
      •69•52•0•5•Updated Jun 19, 2025Jun 19, 2025

    • nextflow_modules

      Public
      A collection of shared Ensembl modules used in NextFlow pipelines
      Nextflow
      •3•3•1•1•Updated Jun 19, 2025Jun 19, 2025

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •35•18•0•3•Updated Jun 19, 2025Jun 19, 2025

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•1•0•4•Updated Jun 18, 2025Jun 18, 2025

    • ensembl-hypsipyle

      Public
      Ensembl Variation GraphQL server
      Python
      •
      Apache License 2.0
      •3•0•5•1•Updated Jun 18, 2025Jun 18, 2025

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •52•22•0•2•Updated Jun 17, 2025Jun 17, 2025

    • ensembl-thoas

      Public
      Son of Ariadne, a GraphQL server and supporting software
      Python
      •
      Apache License 2.0
      •0•3•0•6•Updated Jun 17, 2025Jun 17, 2025

    • ensembl-echo

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Jun 16, 2025Jun 16, 2025

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •44•11•0•8•Updated Jun 13, 2025Jun 13, 2025

    • VEP_plugins

      Public
      Plugins for the Ensembl Variant Effect Predictor (VEP)
      Perl
      •
      Apache License 2.0
      •120•150•6•3•Updated Jun 12, 2025Jun 12, 2025

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •56•28•0•11•Updated Jun 11, 2025Jun 11, 2025

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •156•490•58•6•Updated Jun 11, 2025Jun 11, 2025

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •47•9•0•4•Updated Jun 10, 2025Jun 10, 2025

    • ensembl-rest

      Public
      Language agnostic RESTful data access to Ensembl data over HTTP
      Perl
      •
      Apache License 2.0
      •63•143•4•0•Updated Jun 9, 2025Jun 9, 2025

    • ensembl-web-track-api

      Public
      A Django app for serving the available annotation tracks for Ensembl client.
      Python
      •
      Apache License 2.0
      •0•1•0•1•Updated Jun 6, 2025Jun 6, 2025

    • ensembl-website-help-and-docs

      Public
      documentation for the new Ensembl site
      TypeScript
      •6•1•0•4•Updated Jun 5, 2025Jun 5, 2025

    • ensembl-dauphin-style-compiler

      Public
      "dauphin" style-compiler for genome browser
      Rust
      •0•0•9•2•Updated Jun 4, 2025Jun 4, 2025

    • ensembl-production-services

      Public
      Ensembl production service portal
      djangodjango-rest-frameworkpython3
      Python
      •
      Apache License 2.0
      •1•2•0•2•Updated Jun 3, 2025Jun 3, 2025

    • ensembl-prodinf-jira

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 3, 2025Jun 3, 2025

    • tark

      Public
      HTML
      •
      Apache License 2.0
      •3•4•4•2•Updated Jun 2, 2025Jun 2, 2025

    • hprc-qc

      Public
      Apache License 2.0
      •0•1•3•0•Updated May 29, 2025May 29, 2025