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    217 repositories

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformaticsdatabaseperlensemblcomparative-genomics
      Perl
      •
      Apache License 2.0
      •70•54•0•2•Updated Oct 20, 2025Oct 20, 2025

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •45•12•0•5•Updated Oct 18, 2025Oct 18, 2025

    • amr_genotypes

      Public
      AMR Genotype parser for the EMBL-EBI AMR portal
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 18, 2025Oct 18, 2025

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •165•508•59•7•Updated Oct 17, 2025Oct 17, 2025

    • ensembl-genes-metadata

      Public
      0•1•2•1•Updated Oct 17, 2025Oct 17, 2025

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •50•22•0•2•Updated Oct 17, 2025Oct 17, 2025

    • tark

      Public
      HTML
      •
      Apache License 2.0
      •3•4•4•2•Updated Oct 17, 2025Oct 17, 2025

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •4•15•0•4•Updated Oct 17, 2025Oct 17, 2025

    • ensembl-genes-nf

      Public
      Ensembl Genebuild NextFlow pipelines
      Nextflow
      •
      Apache License 2.0
      •5•2•0•1•Updated Oct 17, 2025Oct 17, 2025

    • ensembl-genes

      Public
      Python Ensembl Gene Annotation code source repository
      Python
      •
      Apache License 2.0
      •4•4•0•2•Updated Oct 17, 2025Oct 17, 2025

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •36•18•0•3•Updated Oct 17, 2025Oct 17, 2025

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •47•9•0•4•Updated Oct 16, 2025Oct 16, 2025

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•1•0•4•Updated Oct 16, 2025Oct 16, 2025

    • ensembl-dauphin-style-compiler

      Public
      "dauphin" style-compiler for genome browser
      Rust
      •0•0•9•2•Updated Oct 15, 2025Oct 15, 2025

    • ensembl-datacheck

      Public
      Code for checking Ensembl databases during release production
      Perl
      •
      Apache License 2.0
      •29•5•0•2•Updated Oct 9, 2025Oct 9, 2025

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •58•30•0•13•Updated Oct 9, 2025Oct 9, 2025

    • regulation-workflows

      Public
      Ensembl Regulation workflows
      Apache License 2.0
      •0•3•0•0•Updated Oct 8, 2025Oct 8, 2025

    • ensembl-variation-pipelines

      Public
      Python
      •
      Apache License 2.0
      •3•0•0•5•Updated Oct 7, 2025Oct 7, 2025

    • plant-scripts

      Public
      Scripting analyses of genomes in Ensembl Plants
      Perl
      •
      Apache License 2.0
      •10•40•1•0•Updated Oct 6, 2025Oct 6, 2025

    • ensembl-website-help-and-docs

      Public
      documentation for the new Ensembl site
      TypeScript
      •6•1•0•5•Updated Oct 6, 2025Oct 6, 2025

    • tark-refseq-loader

      Public
      Python
      •
      Apache License 2.0
      •3•0•0•9•Updated Oct 6, 2025Oct 6, 2025

    • ensembl-echo

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Oct 1, 2025Oct 1, 2025

    • tark-loader

      Public
      Perl
      •
      Apache License 2.0
      •2•0•0•0•Updated Sep 30, 2025Sep 30, 2025

    • ensembl-rest

      Public
      Language agnostic RESTful data access to Ensembl data over HTTP
      Perl
      •
      Apache License 2.0
      •60•149•3•1•Updated Sep 30, 2025Sep 30, 2025

    • ensembl-hive

      Public
      EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
      mysqlpythondockerpipelinesqliteperlpostgresqlslurmehiveensembl
      Perl
      •
      Apache License 2.0
      •28•55•0•2•Updated Sep 29, 2025Sep 29, 2025

    • gene_symbol_transformer

      Public
      Transformer model for gene symbol assignment of protein coding sequences
      Python
      •
      Apache License 2.0
      •0•3•0•7•Updated Sep 26, 2025Sep 26, 2025

    • ensembl-io

      Public
      File parsing and writing code for Ensembl
      Perl
      •
      Apache License 2.0
      •18•10•0•0•Updated Sep 25, 2025Sep 25, 2025

    • ensembl

      Public
      The Ensembl Core Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •79•82•1•0•Updated Sep 25, 2025Sep 25, 2025

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •9•9•0•1•Updated Sep 25, 2025Sep 25, 2025

    • VEP_plugins

      Public
      Plugins for the Ensembl Variant Effect Predictor (VEP)
      Perl
      •
      Apache License 2.0
      •121•157•6•4•Updated Sep 24, 2025Sep 24, 2025