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    215 repositories

    • ensembl-production

      Public
      Ensembl Production code
      Perl
      •
      Apache License 2.0
      •45•12•0•3•Updated Sep 13, 2025Sep 13, 2025

    • ensembl-compara

      Public
      The Ensembl Compara Perl API and SQL schema
      mysqlapibioinformaticsdatabasecomparative-genomicsperlensembl
      Perl
      •
      Apache License 2.0
      •70•54•0•6•Updated Sep 12, 2025Sep 12, 2025

    • plant-scripts

      Public
      Scripting analyses of genomes in Ensembl Plants
      Perl
      •
      Apache License 2.0
      •10•40•1•0•Updated Sep 12, 2025Sep 12, 2025

    • ensembl-web-resolver

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Sep 12, 2025Sep 12, 2025

    • ensembl-metadata-api

      Public
      ensembl_genome_metadata schema SQLAlchemy ORM layer
      Python
      •
      Apache License 2.0
      •2•1•0•4•Updated Sep 12, 2025Sep 12, 2025

    • ensembl-genes-metadata

      Public
      0•1•2•1•Updated Sep 12, 2025Sep 12, 2025

    • ensembl-production-metazoa

      Public
      Metazoan production helper library and script to import ad-hoc annotations.
      Shell
      •
      Apache License 2.0
      •2•1•0•0•Updated Sep 12, 2025Sep 12, 2025

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •36•18•0•4•Updated Sep 11, 2025Sep 11, 2025

    • ensembl-dauphin-style-compiler

      Public
      "dauphin" style-compiler for genome browser
      Rust
      •0•0•9•2•Updated Sep 11, 2025Sep 11, 2025

    • ensembl-genes

      Public
      Python Ensembl Gene Annotation code source repository
      Python
      •
      Apache License 2.0
      •4•4•0•3•Updated Sep 10, 2025Sep 10, 2025

    • ensembl-vep

      Public
      The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
      Perl
      •
      Apache License 2.0
      •162•504•57•5•Updated Sep 10, 2025Sep 10, 2025

    • public-plugins

      Public
      Plugins for an Ensembl website
      JavaScript
      •
      Apache License 2.0
      •47•9•0•2•Updated Sep 10, 2025Sep 10, 2025

    • ensembl-webcode

      Public
      The code to run an Ensembl website
      Perl
      •
      Apache License 2.0
      •51•22•0•8•Updated Sep 10, 2025Sep 10, 2025

    • ensembl-echo

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•1•Updated Sep 9, 2025Sep 9, 2025

    • ensembl-genomio

      Public
      Pipelines to turn basic genomic data into Ensembl cores and back
      Python
      •
      Apache License 2.0
      •9•9•0•2•Updated Sep 9, 2025Sep 9, 2025

    • ensembl-cdm-docs

      Public
      Core data modeling documentation repository.
      Apache License 2.0
      •0•1•7•2•Updated Sep 5, 2025Sep 5, 2025

    • ensembl-hypsipyle

      Public
      Ensembl Variation GraphQL server
      Python
      •
      Apache License 2.0
      •3•0•5•1•Updated Sep 5, 2025Sep 5, 2025

    • ensembl-client

      Public
      Ensembl beta client
      TypeScript
      •
      Apache License 2.0
      •4•15•0•2•Updated Sep 5, 2025Sep 5, 2025

    • ensemblgenomes.org

      Public
      Source code for ensemblgenomes.org
      TypeScript
      •
      Apache License 2.0
      •1•0•0•1•Updated Sep 3, 2025Sep 3, 2025

    • ensembl-anno

      Public
      Python
      •
      Apache License 2.0
      •7•11•1•2•Updated Aug 29, 2025Aug 29, 2025

    • tagene

      Public
      Repository hosting the TAGENE annotation pipeline
      Perl
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 28, 2025Aug 28, 2025

    • ensembl-website-help-and-docs

      Public
      documentation for the new Ensembl site
      TypeScript
      •6•1•0•4•Updated Aug 28, 2025Aug 28, 2025

    • ensembl-hive

      Public
      EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
      mysqlpythondockerpipelinesqliteperlpostgresqlslurmehiveensembl
      Perl
      •
      Apache License 2.0
      •28•55•0•3•Updated Aug 28, 2025Aug 28, 2025

    • ensembl-variation-pipelines

      Public
      Python
      •
      Apache License 2.0
      •2•0•0•3•Updated Aug 27, 2025Aug 27, 2025

    • ensembl-datacheck

      Public
      Code for checking Ensembl databases during release production
      Perl
      •
      Apache License 2.0
      •30•5•0•1•Updated Aug 26, 2025Aug 26, 2025

    • ensembl-variation

      Public
      The Ensembl Variation Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •57•29•0•14•Updated Aug 26, 2025Aug 26, 2025

    • VEP_plugins

      Public
      Plugins for the Ensembl Variant Effect Predictor (VEP)
      Perl
      •
      Apache License 2.0
      •122•158•5•2•Updated Aug 26, 2025Aug 26, 2025

    • ensembl

      Public
      The Ensembl Core Perl API and SQL schema
      Perl
      •
      Apache License 2.0
      •78•80•1•0•Updated Aug 12, 2025Aug 12, 2025

    • ensembl-orm

      Public
      API for non genomic databases
      Perl
      •
      Apache License 2.0
      •2•1•0•0•Updated Aug 8, 2025Aug 8, 2025

    • hprc-qc

      Public
      Perl
      •
      Apache License 2.0
      •1•1•3•0•Updated Aug 7, 2025Aug 7, 2025