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    63 repositories

    • AF2chi

      Public
      Jupyter Notebook
      •
      MIT License
      •1•15•0•0•Updated Jul 21, 2025Jul 21, 2025

    • _2025_hansen_trBME

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 19, 2025Jul 19, 2025

    • PRISM

      Public
      Software development pipelines related to the PRISM project
      Python
      •4•11•17•0•Updated Jun 24, 2025Jun 24, 2025

    • _2025_Larsen_degron_transcriptionfactors

      Public
      Scripts and output from "Comprehensive degron mapping in human transcription factors"
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 20, 2025Jun 20, 2025

    • _2025_Voutsinos_degron_cytosol

      Public
      A complete map of human cytosolic degrons and characterization of their exposure and relevance for disease
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • _2025_thomsen_ppar

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • CALVADOS

      Public
      Python
      •
      GNU General Public License v3.0
      •15•68•2•1•Updated Jun 16, 2025Jun 16, 2025

    • _2025_Rauh_PEG

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 30, 2025May 30, 2025

    • _2024_cagiada-jonsson-func

      Public
      Jupyter Notebook
      •
      MIT License
      •0•5•1•0•Updated May 29, 2025May 29, 2025

    • DEERpredict

      Public
      Software for the prediction of DEER and PRE data from conformational ensembles.
      molecular-simulationbiophysicsnmr-spectroscopyeprdeer
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •3•12•0•0•Updated May 6, 2025May 6, 2025

    • _2024_Larsen-Ledet_CPOP

      Public
      CPOP processing and analysis code
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 25, 2025Apr 25, 2025

    • _2025_rauh_phosphorylation

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 21, 2025Apr 21, 2025

    • ColabCALVADOS

      Public
      Jupyter Notebook on Google Colaboratory to generate and refine protein conformational ensembles from CALVADOS simulations
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Apr 16, 2025Apr 16, 2025

    • _2023_Tesei_IDRome

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •6•43•4•0•Updated Apr 16, 2025Apr 16, 2025

    • _2024_Cao_CALVADOSCOM

      Public
      Jupyter Notebook
      •
      MIT License
      •2•16•0•0•Updated Apr 7, 2025Apr 7, 2025

    • _2025_Schulze_abundance-model

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 3, 2025Apr 3, 2025

    • _2024_Schulze_abundance-analysis

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Apr 3, 2025Apr 3, 2025

    • _2024_yasuda_RNA

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Apr 2, 2025Apr 2, 2025

    • _2022_ML-ddG-Blaabjerg

      Public
      Python
      •
      Other
      •11•51•8•0•Updated Mar 28, 2025Mar 28, 2025

    • _2024_buelow_PSpred

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•6•1•0•Updated Mar 26, 2025Mar 26, 2025

    • _2024_cagiada_stability

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •6•70•1•0•Updated Mar 19, 2025Mar 19, 2025

    • _2023_Thomasen_Martini

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•5•4•0•Updated Jan 20, 2025Jan 20, 2025

    • _2024_Larsen-Ledet_MLH1

      Public
      data and scripts for "Disentangling the mutational effects on protein stability and interaction of human MLH1"
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • _2024_Theisen_Proline_Selection

      Public
      Repository for code and data related to publication
      Component Pascal
      •0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • _2023_Pesce_IDPdesign

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated Jan 16, 2025Jan 16, 2025

    • FRETpredict

      Public
      Software for the prediction of FRET data from conformational ensembles.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •3•23•1•0•Updated Dec 19, 2024Dec 19, 2024

    • _2025_Pedersen_PRKN_BAG6

      Public
      BAG6 and RNF126 are broadly involved in protein quality control of non-native missense protein variants
      R
      •
      MIT License
      •0•0•0•0•Updated Dec 13, 2024Dec 13, 2024

    • _2024_due_ANAC

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • _2023_Garcia-Cabau_CPEB4

      Public
      Molecular simulations of the N-terminal domain of CPEB4
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •1•1•0•0•Updated Oct 2, 2024Oct 2, 2024

    • _2023_Blaabjerg_SSEmb

      Public
      Jupyter Notebook
      •
      MIT License
      •4•38•2•0•Updated Sep 17, 2024Sep 17, 2024