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    • nnUNet

      Public
      Python
      2.3k8k33132Updated Feb 4, 2026Feb 4, 2026
    • napari-mlarray

      Public
      A reader/writer Napari plugin for MLArray images
      Python
      0101Updated Feb 3, 2026Feb 3, 2026
    • LesionLocator

      Public
      LesionLocator is a framework for zero-shot lesion segmentation and longitudinal tumor tracking in 3D full-body imaging.
      Python
      98930Updated Feb 3, 2026Feb 3, 2026
    • mlarray

      Public
      Array format specialized for Machine Learning with Blosc2 backend and standardized metadata.
      Python
      0900Updated Feb 2, 2026Feb 2, 2026
    • dynamic-network-architectures

      Public
      Python
      5814854Updated Feb 2, 2026Feb 2, 2026
    • batchgeneratorsv2

      Public
      Python
      162505Updated Jan 26, 2026Jan 26, 2026
    • Longitudinal4DMed

      Public
      Python
      0600Updated Jan 22, 2026Jan 22, 2026
    • nnActive

      Public
      Python
      01510Updated Jan 20, 2026Jan 20, 2026
    • Temporal-Flow-Matching

      Public
      Python
      01000Updated Jan 16, 2026Jan 16, 2026
    • ToothSeg

      Public
      Python
      12610Updated Jan 7, 2026Jan 7, 2026
    • napari-voxtell

      Public
      Python
      01200Updated Jan 7, 2026Jan 7, 2026
    • VoxTell

      Public
      Free-Text Promptable Universal 3D Medical Image Segmentation
      Python
      710640Updated Dec 27, 2025Dec 27, 2025
    • Data Inspection Plugin, designed to streamline file navigation and enhance the efficiency of data inspection.
      Python
      11300Updated Dec 22, 2025Dec 22, 2025
    • ViData

      Public
      A unified Python toolkit for managing, processing, and analyzing 2D and 3D vision data — from raw files to task-aware analytics. Designed to streamline computer…
      Python
      0300Updated Dec 22, 2025Dec 22, 2025
    • Plugin to send and receive multi-dimensional image data for visualization in Napari over the network.
      Python
      0100Updated Dec 19, 2025Dec 19, 2025
    • 0000Updated Dec 17, 2025Dec 17, 2025
    • MedVol

      Public
      Python
      01600Updated Dec 12, 2025Dec 12, 2025
    • Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures
      Python
      1112961Updated Dec 8, 2025Dec 8, 2025
    • This repository provides Docker images for running nnUNet inference in a reproducible and containerized environment, tailored for the EUCAIM project.
      Dockerfile
      1000Updated Dec 8, 2025Dec 8, 2025
    • Jupyter Notebook
      0000Updated Dec 4, 2025Dec 4, 2025
    • confly

      Public
      Python
      0100Updated Dec 3, 2025Dec 3, 2025
    • ScribbleBench

      Public
      [MICCAI 2025] Revisiting 3D Medical Scribble Supervision: Benchmarking Beyond Cardiac Segmentation
      Python
      2510Updated Dec 3, 2025Dec 3, 2025
    • Python
      0200Updated Dec 3, 2025Dec 3, 2025
    • tqdmp

      Public
      Multiprocessing with tqdm progressbars!
      Python
      0210Updated Dec 3, 2025Dec 3, 2025
    • nnInteractive

      Public
      nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ di…
      Python
      40354181Updated Nov 28, 2025Nov 28, 2025
    • segmentyourpathoslidesonalaptop

      Public
      Python
      3700Updated Nov 26, 2025Nov 26, 2025
    • patchly

      Public
      A grid sampler for larger-than-memory N-dimensional images
      Python
      22600Updated Nov 11, 2025Nov 11, 2025
    • Python
      0000Updated Nov 10, 2025Nov 10, 2025
    • Python
      0000Updated Nov 10, 2025Nov 10, 2025
    • ContrastiveVirtualStaining

      Public
      Python
      0100Updated Oct 31, 2025Oct 31, 2025