Skip to content

@catalystneuro CatalystNeuro

Change the repository type filter

All

    Repositories list

    216 repositories

    • neuroconv

      Public
      Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •31•67•109•25•Updated Nov 15, 2025Nov 15, 2025

    • roiextractors

      Public
      Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•15•26•8•Updated Nov 15, 2025Nov 15, 2025

    • IBL-mesoscope-to-nwb

      Public
      NWB Conversion project for IBL mesoscope dataset
      Jupyter Notebook
      •
      MIT License
      •0•0•1•2•Updated Nov 14, 2025Nov 14, 2025

    • woodcode

      Public
      A python package for neural data analysis in Wood/Dudchenko lab
      Python
      •
      GNU General Public License v3.0
      •2•0•0•1•Updated Nov 13, 2025Nov 13, 2025

    • IBL-widefield-to-nwb

      Public
      NWB Conversion project for the IBL widefield dataset
      Python
      •
      MIT License
      •0•0•2•2•Updated Nov 13, 2025Nov 13, 2025

    • schwerdt-lab-to-nwb

      Public
      NWB Conversion project for the Schwerdt lab at University of Pittsburgh.
      Jupyter Notebook
      •
      MIT License
      •0•0•3•1•Updated Nov 13, 2025Nov 13, 2025

    • catalystneuro.github.io

      Public
      TypeScript
      •0•0•0•2•Updated Nov 12, 2025Nov 12, 2025

    • hnasko-lab-to-nwb

      Public
      NWB Conversion project for the Hnasko Lab
      Jupyter Notebook
      •
      MIT License
      •0•0•1•0•Updated Nov 12, 2025Nov 12, 2025

    • kind-lab-to-nwb

      Public
      NWB Conversion project for the Kind lab.
      Jupyter Notebook
      •
      MIT License
      •2•1•5•1•Updated Nov 12, 2025Nov 12, 2025

    • example-notebooks

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •17•0•0•0•Updated Nov 12, 2025Nov 12, 2025

    • turner-lab-to-nwb

      Public
      NWB Conversion project for the Turner lab at the University of Pittsburgh.
      Python
      •
      MIT License
      •0•0•3•0•Updated Nov 11, 2025Nov 11, 2025

    • IBL-to-nwb

      Public
      Conversion of IBL data to NWB format.
      nwb-conversion
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•3•9•3•Updated Nov 10, 2025Nov 10, 2025

    • meletis-lab-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Nov 5, 2025Nov 5, 2025

    • ndx-fscv

      Public
      This NWB extension defines data types for Fast-Scan Cyclic Voltammetry (FSCV), a neurochemical recording technique. It supports storing the applied triangular ramp waveform, measured electrochemical current, and derived cyclic voltammograms used to study dopamine and other neuromodulator dynamics.
      Python
      •
      MIT License
      •0•0•3•0•Updated Nov 4, 2025Nov 4, 2025

    • claude-skills

      Public
      Public repository of skills for neurophysiology research
      MIT License
      •0•0•0•0•Updated Nov 2, 2025Nov 2, 2025

    • agent-foundational-studies

      Public
      Runs of a coding agent attempting to reproduce foundational studies in neurophysiology
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

    • pagan-lab-to-nwb

      Public
      NWB Conversion project for the Pagan lab.
      Jupyter Notebook
      •
      MIT License
      •0•0•1•1•Updated Oct 28, 2025Oct 28, 2025

    • probeinterface

      Public
      Python package to handle probe layout, geometry and wiring to device.
      Python
      •
      MIT License
      •47•0•0•0•Updated Oct 27, 2025Oct 27, 2025

    • khaliq-lab-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Oct 24, 2025Oct 24, 2025

    • hdmf

      Public
      The Hierarchical Data Modeling Framework
      Python
      •
      Other
      •25•0•0•0•Updated Oct 22, 2025Oct 22, 2025

    • cai-lab-to-nwb

      Public
      NWB Conversion project for the Cai lab
      Jupyter Notebook
      •
      MIT License
      •0•0•2•0•Updated Oct 21, 2025Oct 21, 2025

    • cookiecutter-my-lab-to-nwb-template

      Public
      The standard cookiecutter template for all lab-specific NWB conversions.
      Python
      •
      MIT License
      •1•2•3•1•Updated Oct 21, 2025Oct 21, 2025

    • ndx-binned-spikes

      Public
      NWB extension to store binned spikes (e.g. a non averaged PSTH) with respect to an time events
      Python
      •
      MIT License
      •0•0•1•0•Updated Oct 20, 2025Oct 20, 2025

    • spyglass

      Public
      Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
      Jupyter Notebook
      •
      MIT License
      •52•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • dandi-annotations

      Public
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•4•Updated Oct 7, 2025Oct 7, 2025

    • nwbinspector

      Public
      Tool to help inspect NWB files for compliance with NWB Best Practices
      Python
      •
      Other
      •11•0•0•0•Updated Oct 6, 2025Oct 6, 2025

    • dan-lab-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•1•1•Updated Oct 3, 2025Oct 3, 2025

    • ndx-fiber-photometry

      Public
      This is an NWB extension for storing fiber photometry recordings and associated metadata.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•0•Updated Sep 24, 2025Sep 24, 2025

    • ndx-ophys-devices

      Public
      This is an NWB extension for storing metadata of devices used in optical experimental setup (microscopy, fiber photometry, optogenetic stimulation etc.)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•1•0•Updated Sep 22, 2025Sep 22, 2025

    • ndx-subjects

      Public
      An NWB extension for custom species metadata.
      Python
      •
      MIT License
      •0•0•0•1•Updated Sep 4, 2025Sep 4, 2025