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    217 repositories

    • lazyslice

      Public
      Lazy transposing and slicing of h5py and Zarr Datasets
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•3•3•1•Updated Dec 23, 2025Dec 23, 2025

    • .github

      Public
      Company-wide documentation of practices, protocols, policies, and processes.
      0•0•1•0•Updated Dec 23, 2025Dec 23, 2025

    • IBL-to-nwb

      Public
      Conversion of IBL data to NWB format.
      nwb-conversion
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•3•9•3•Updated Dec 22, 2025Dec 22, 2025

    • neuroconv

      Public
      Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •33•71•110•19•Updated Dec 22, 2025Dec 22, 2025

    • roiextractors

      Public
      Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•15•26•9•Updated Dec 22, 2025Dec 22, 2025

    • woodcode

      Public
      A python package for neural data analysis in Wood/Dudchenko lab
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Dec 19, 2025Dec 19, 2025

    • catalystneuro.github.io

      Public
      TypeScript
      •0•0•0•6•Updated Dec 19, 2025Dec 19, 2025

    • ndx-anatomical-localization

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•4•2•Updated Dec 18, 2025Dec 18, 2025

    • kind-lab-to-nwb

      Public
      NWB Conversion project for the Kind lab.
      Jupyter Notebook
      •
      MIT License
      •2•1•5•1•Updated Dec 18, 2025Dec 18, 2025

    • IBL-widefield-to-nwb

      Public
      NWB Conversion project for the IBL widefield dataset
      Python
      •
      MIT License
      •0•0•3•3•Updated Dec 17, 2025Dec 17, 2025

    • ndx-spatial-transformation

      Public
      NWB extension for storing spatial landmarks and spatial transformations in neuroimaging data. Enables standardized representation of anatomical landmarks with their pixel coordinates in both original and registered image spaces, along with the associated rotation, translation, and scaling parameters used for spatial registration.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 17, 2025Dec 17, 2025

    • schneider-lab-to-nwb

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•1•2•Updated Dec 16, 2025Dec 16, 2025

    • turner-lab-to-nwb

      Public
      NWB Conversion project for the Turner lab at the University of Pittsburgh.
      Python
      •
      MIT License
      •0•0•3•3•Updated Dec 9, 2025Dec 9, 2025

    • schwerdt-lab-to-nwb

      Public
      NWB Conversion project for the Schwerdt lab at University of Pittsburgh.
      Jupyter Notebook
      •
      MIT License
      •0•0•2•1•Updated Dec 6, 2025Dec 6, 2025

    • IBL-mesoscope-to-nwb

      Public
      NWB Conversion project for IBL mesoscope dataset
      Jupyter Notebook
      •
      MIT License
      •0•0•1•1•Updated Dec 5, 2025Dec 5, 2025

    • ndx-microscopy

      Public
      An enhancement to core NWB schema types related to microscopy data.
      Python
      •
      MIT License
      •0•0•9•4•Updated Dec 3, 2025Dec 3, 2025

    • ndx-ophys-devices

      Public
      This is an NWB extension for storing metadata of devices used in optical experimental setup (microscopy, fiber photometry, optogenetic stimulation etc.)
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•1•1•Updated Dec 3, 2025Dec 3, 2025

    • mcp

      Public
      CatalystNeuro MCP servers
      Python
      •
      MIT License
      •0•1•2•3•Updated Dec 2, 2025Dec 2, 2025

    • dandi-docusaurus-example

      Public
      example of website using docusaurus
      TypeScript
      •
      MIT License
      •0•0•0•6•Updated Dec 2, 2025Dec 2, 2025

    • hnasko-lab-to-nwb

      Public
      NWB Conversion project for the Hnasko Lab
      Jupyter Notebook
      •
      MIT License
      •0•0•1•1•Updated Nov 24, 2025Nov 24, 2025

    • example-notebooks

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •17•0•0•0•Updated Nov 12, 2025Nov 12, 2025

    • meletis-lab-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Nov 5, 2025Nov 5, 2025

    • ndx-fscv

      Public
      This NWB extension defines data types for Fast-Scan Cyclic Voltammetry (FSCV), a neurochemical recording technique. It supports storing the applied triangular ramp waveform, measured electrochemical current, and derived cyclic voltammograms used to study dopamine and other neuromodulator dynamics.
      Python
      •
      MIT License
      •0•0•3•0•Updated Nov 4, 2025Nov 4, 2025

    • claude-skills

      Public
      Public repository of skills for neurophysiology research
      MIT License
      •0•0•0•0•Updated Nov 2, 2025Nov 2, 2025

    • agent-foundational-studies

      Public
      Runs of a coding agent attempting to reproduce foundational studies in neurophysiology
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Oct 29, 2025Oct 29, 2025

    • pagan-lab-to-nwb

      Public
      NWB Conversion project for the Pagan lab.
      Jupyter Notebook
      •
      MIT License
      •0•0•1•1•Updated Oct 28, 2025Oct 28, 2025

    • probeinterface

      Public
      Python package to handle probe layout, geometry and wiring to device.
      Python
      •
      MIT License
      •48•0•0•0•Updated Oct 27, 2025Oct 27, 2025

    • khaliq-lab-to-nwb

      Public
      Python
      •
      MIT License
      •0•0•0•1•Updated Oct 24, 2025Oct 24, 2025

    • hdmf

      Public
      The Hierarchical Data Modeling Framework
      Python
      •
      Other
      •25•0•0•0•Updated Oct 22, 2025Oct 22, 2025

    • cai-lab-to-nwb

      Public
      NWB Conversion project for the Cai lab
      Jupyter Notebook
      •
      MIT License
      •0•0•2•0•Updated Oct 21, 2025Oct 21, 2025