Repositories list

• single-cell-data-portal

  Public
  The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.

  TypeScript

  •

  MIT License

  •14•65•261•17•Updated Dec 25, 2024Dec 25, 2024

• cryoet-data-portal

  Public
  CryoET Data Portal

  TypeScript

  •

  MIT License

  •11•21•254•11•Updated Dec 25, 2024Dec 25, 2024

• cryoet-data-portal-neuroglancer

  Public
  CryoET Data Portal Neuroglancer configuration helper

  Python

  •

  MIT License

  •2•1•1•4•Updated Dec 24, 2024Dec 24, 2024

• single-cell-explorer

  Public
  Hosted version of cellxgene

  TypeScript

  •

  MIT License

  •3•12•60•3•Updated Dec 24, 2024Dec 24, 2024

• cryoet-data-portal-backend

  Public
  CryoET Data Portal API server & ingestion scripts

  Python

  •

  MIT License

  •2•3•6•9•Updated Dec 24, 2024Dec 24, 2024

• single-cell-curation

  Public
  Code and documentation for the curation of cellxgene datasets

  Python

  •

  MIT License

  •24•39•56•4•Updated Dec 23, 2024Dec 23, 2024

• czid-web

  Public
  Infectious Disease Sequencing Platform

  scienceresearchbiology+ 12sequencingcomputational-biologynext-generation-sequencingbioinformatics-pipelineglobal-healthvirologyinfectious-diseases+ 5

  TypeScript

  •

  MIT License

  •24•80•0•2•Updated Dec 23, 2024Dec 23, 2024

• edu-design-system

  Public
  Design system for Education Projects

  reactdesign-systemstyle-dictionary

  TypeScript

  •

  MIT License

  •4•29•1•1•Updated Dec 23, 2024Dec 23, 2024

• happy

  Public
  Happy Path Deployment Tool

  kubernetesinfrastructureterraform

  Go

  •

  MIT License

  •2•18•13•18•Updated Dec 23, 2024Dec 23, 2024

• cellxgene-ontology-guide

  Public
  Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb

  Python

  •

  MIT License

  •1•5•8•5•Updated Dec 23, 2024Dec 23, 2024

• go-misc

  Public
  miscellaneous go code

  Go

  •

  MIT License

  •3•7•1•4•Updated Dec 20, 2024Dec 20, 2024

• cztack

  Public
  The CZI infrastructure stack.

  HCL

  •

  MIT License

  •25•64•3•5•Updated Dec 19, 2024Dec 19, 2024

• czid-workflows

  Public
  Portable WDL workflows for CZ ID production pipelines

  Python

  •

  MIT License

  •7•39•3•8•Updated Dec 18, 2024Dec 18, 2024

• sci-components

  Public
  2021 Science Design System Component Library

  reactcsstheme+ 1design-system

  TypeScript

  •

  MIT License

  •7•25•111•3•Updated Dec 18, 2024Dec 18, 2024

• cellxgene-census

  Public
  CZ CELLxGENE Discover Census

  Jupyter Notebook

  •

  MIT License

  •22•91•118•17•Updated Dec 16, 2024Dec 16, 2024

• napari-hub

  Public
  Discover, install, and share napari plugins

  pythontrackingmachine-learning+ 12deep-learninganalysisdetectionpluginsthemesregistrationsegmentation+ 5

  TypeScript

  •

  MIT License

  •18•51•96•10•Updated Dec 12, 2024Dec 12, 2024

• camelot

  Public
  Go

  •

  MIT License

  •0•1•0•0•Updated Dec 12, 2024Dec 12, 2024

• czid-graphql-federation-server

  Public
  GraphQL Mesh server for CZ ID

  TypeScript

  •

  MIT License

  •0•0•0•7•Updated Dec 11, 2024Dec 11, 2024

• fogg

  Public
  Manage Infrastructure as Code with less pain.

  terraforminfrastructure-as-codeinfrastructure

  Go

  •

  MIT License

  •20•295•37•3•Updated Dec 11, 2024Dec 11, 2024

• homebrew-tap

  Public
  Ruby

  •2•3•2•0•Updated Dec 10, 2024Dec 10, 2024

• argus-artifacts

  Public
  MIT License

  •0•1•0•0•Updated Dec 10, 2024Dec 10, 2024

• github-actions

  Public
  A collection of re-usable GitHub Actions

  HCL

  •

  MIT License

  •3•5•1•2•Updated Dec 10, 2024Dec 10, 2024

• cellxgene

  Public
  An interactive explorer for single-cell transcriptomics data

  datavizscrna-seqtranscriptomics+ 2visualizationscientific

  JavaScript

  •

  MIT License

  •122•648•129•0•Updated Dec 7, 2024Dec 7, 2024

• argo-helm-charts

  Public
  Smarty

  •0•0•0•2•Updated Dec 5, 2024Dec 5, 2024

• platformics

  Public
  Codegen Python GraphQL Entity Framework

  Python

  •

  MIT License

  •0•3•14•13•Updated Nov 25, 2024Nov 25, 2024

• czi-oss-training

  Public
  Training Materials for Good Open Source Citizenship

  Creative Commons Attribution 4.0 International

  •3•10•4•0•Updated Nov 25, 2024Nov 25, 2024

• aws-oidc

  Public
  AWS OIDC Federation

  Go

  •

  MIT License

  •5•15•1•2•Updated Nov 25, 2024Nov 25, 2024

• miniwdl-viz

  Public
  A library to decompose WDL files into a JSON/YAML, and create a mermaid flowchart

  WDL

  •

  MIT License

  •0•3•0•3•Updated Nov 22, 2024Nov 22, 2024

• napari-cryoet-data-portal

  Public
  A napari plugin to list, preview, and open data from the CZ Imaging Institute's CryoET Data Portal

  Python

  •

  MIT License

  •2•9•4•1•Updated Nov 22, 2024Nov 22, 2024

• scRNA-python-workshop

  Public archive
  All the action is on the course webpage -->

  Jupyter Notebook

  •18•28•2•3•Updated Nov 12, 2024Nov 12, 2024