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    15 repositories

    • epiAneufinder

      Public
      R package to detect breakpoints and assign somies to scATAC-seq data
      HTML
      •
      GNU General Public License v3.0
      •10•41•8•0•Updated Oct 2, 2025Oct 2, 2025

    • colome-tatche-lab.github.io

      Public
      HTML
      •0•0•0•0•Updated Oct 1, 2025Oct 1, 2025

    • pyEpiAneufinder

      Public
      Python version of epiAneufinder
      Python
      •0•0•0•0•Updated Sep 29, 2025Sep 29, 2025

    • benchmark_scrnaseq_cnv_callers

      Public
      Analysis pipeline used to benchmark scRNA-seq copy number variant callers
      R
      •
      MIT License
      •2•9•0•0•Updated Jun 13, 2025Jun 13, 2025

    • community

      Public
      cell-cell communication algorithm
      R
      •
      MIT License
      •4•0•0•0•Updated Apr 11, 2025Apr 11, 2025

    • epiScanpy

      Public
      Episcanpy: Epigenomics Single Cell Analysis in Python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •33•147•26•3•Updated Dec 5, 2024Dec 5, 2024

    • community-paper

      Public
      Jupyter Notebook
      •0•1•3•0•Updated Nov 25, 2024Nov 25, 2024

    • scSwitchFilter

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 11, 2024Mar 11, 2024

    • ARID1A_follicular_lymphoma

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Dec 11, 2023Dec 11, 2023

    • epiAneufinder_analyses

      Public
      Scripts and notebooks describing the analyses and plots that included in the epiAneufinder publication
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Nov 9, 2023Nov 9, 2023

    • scmoib-package

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 27, 2022Apr 27, 2022

    • episcanpy_doc

      Public
      0•0•0•0•Updated Sep 5, 2021Sep 5, 2021

    • episciny_doc

      Public
      0•0•0•0•Updated Jun 21, 2021Jun 21, 2021

    • colomemaria.github.io

      Public
      0•0•0•0•Updated Jun 21, 2021Jun 21, 2021

    • episcanpy-paper

      Public
      Jupyter Notebook
      •3•9•0•0•Updated Feb 26, 2021Feb 26, 2021