Repositories list

• linkml-map

  Public
  Mapping between LinkML schemas

  etlmappingmonarchinitiative+ 3linkmldata-model-mappingai4curation

  Python

  •

  Other

  •3•27•15•7•Updated Dec 17, 2025Dec 17, 2025

• linkml-reference-validator

  Public
  Validate that supporting text quotes in your data actually appear in their cited references

  pubmedmonarchinitiativelinkml+ 3agentic-aiai-guardrailsai4curation

  Python

  •

  Apache License 2.0

  •0•8•0•0•Updated Dec 17, 2025Dec 17, 2025

• linkml

  Public
  Linked Open Data Modeling Language

  schemalinked-datajson-schema+ 13rdfmodelingsemantic-webowlstandardsdata-modelinghacktoberfest+ 6

  Python

  •

  Apache License 2.0

  •142•437•629•45•Updated Dec 17, 2025Dec 17, 2025

• dm-bip

  Public
  Data Model Based Ingestion Pipeline

  Jupyter Notebook

  •

  MIT License

  •0•10•44•4•Updated Dec 16, 2025Dec 16, 2025

• linkml-browser

  Public
  javascriptpythonstatic-site-generator+ 2user-interfacelinkml

  HTML

  •0•4•0•5•Updated Dec 16, 2025Dec 16, 2025

• valuesets

  Public
  Common value sets (enums) for science, biomedicine, computing, and other areas

  semanticsstandardsmonarchinitiative+ 4fair-datalinkmlvalue-setsai4curation

  Python

  •

  Apache License 2.0

  •0•10•5•8•Updated Dec 15, 2025Dec 15, 2025

• linkml-term-validator

  Public
  Validating LinkML schemas and datasets that depend on external terms

  validationontologiesobofoundry+ 1linkml

  Python

  •

  Apache License 2.0

  •0•5•0•5•Updated Dec 15, 2025Dec 15, 2025

• linkml-registry

  Public
  Registry of schemas that use LinkML

  registryschema-registryschemas+ 1linkml

  Python

  •5•14•1•1•Updated Dec 15, 2025Dec 15, 2025

• schema-automator

  Public
  Automated assistance for the schema development lifecycle

  pythontoolslinked-data+ 8owlspreadsheetsdata-modelingschema-inferencecsvslinkmlincatools+ 1

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •23•53•39•3•Updated Dec 12, 2025Dec 12, 2025

• linkml.github.io

  Public
  Website/splash page for main LinkML project

  jekyllwebsitedata-modeling+ 2splash-pagelinkml

  HTML

  •

  MIT License

  •5•1•0•0•Updated Dec 12, 2025Dec 12, 2025

• linkml-runtime

  Public
  Runtime support for linkml generated models

  pythonconversionhacktoberfest+ 4object-modelinstanceslinkmllinkml-runtime

  Python

  •

  Creative Commons Zero v1.0 Universal

  •35•41•1•24•Updated Dec 10, 2025Dec 10, 2025

• linkml-model

  Public
  Link Modeling Language (LinkML) model

  yamlmetadatajson+ 12linked-datajson-schemaumlsemantic-webmetamodelschema-languagedata-integration+ 5

  Python

  •

  Creative Commons Zero v1.0 Universal

  •21•60•2•18•Updated Dec 9, 2025Dec 9, 2025

• linkml-data-qc

  Public
  A compliance analysis tool for LinkML data files

  data-engineeringfair-datadata-qc+ 1linkml

  Python

  •

  Apache License 2.0

  •0•3•0•0•Updated Dec 8, 2025Dec 8, 2025

• linkml-project-copier

  Public
  A copier template for your next LinkML project

  templateschemacopier+ 3monarchinitiativelinkmlai4curation

  Jinja

  •

  MIT License

  •7•6•12•0•Updated Dec 5, 2025Dec 5, 2025

• linkml-store

  Public
  wrapper for multiple linkml storage engines

  mongomongodbrdf+ 10data-lakehdf5nosql-databasetriplestoredatabase-wrapperdata-stacksemweb+ 3

  Python

  •

  MIT License

  •3•23•3•3•Updated Nov 24, 2025Nov 24, 2025

• linkml-tutorial-2024

  Public archive
  Python

  •

  MIT License

  •0•1•0•0•Updated Nov 5, 2025Nov 5, 2025

• linkml-tutorial-2025

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•5•Updated Nov 5, 2025Nov 5, 2025

• prefixmaps

  Public
  Semantic prefix map registry

  obofoundrybioregistrylinkml+ 1prefixmaps

  Python

  •

  Apache License 2.0

  •3•13•11•0•Updated Oct 31, 2025Oct 31, 2025

• linkml-project-cookiecutter

  Public archive
  A cookiecutter for linkml projects. An equivalent of `linkml-ws new project-name`.

  Python

  •

  Creative Commons Zero v1.0 Universal

  •19•27•19•0•Updated Oct 23, 2025Oct 23, 2025

• linkml-solr

  Public
  Simple wrapper for using Solr with LinkML schemas

  metadatasolrlinkml

  Python

  •1•5•1•0•Updated Sep 11, 2025Sep 11, 2025

• cmdr

  Public
  Python

  •

  MIT License

  •0•6•3•0•Updated Aug 9, 2025Aug 9, 2025

• schemasheets

  Public
  Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats

  metadataschemasspreadsheets+ 6shexshaclfair-datalinkmlshape-languagessheets2linkml

  Python

  •5•48•30•0•Updated May 1, 2025May 1, 2025

• linkml-arrays

  Public
  Support for loading and dumping N-dimensional arrays in LinkML.

  linked-datanumpyarrays+ 4multidimensional-arrayszarrlinkmlhdmf

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•6•7•4•Updated Jan 18, 2025Jan 18, 2025

• linkml-arrays-paper

  Public
  Perspective Paper on LinkML Arrays

  TeX

  •0•0•12•0•Updated Nov 14, 2024Nov 14, 2024

• linkml-common

  Public
  ALPHA common modeling patterns

  schema-orgcommon-data-modellinkml

  Python

  •

  MIT License

  •0•6•0•0•Updated Sep 16, 2024Sep 16, 2024

• linkml-tutorial

  Public
  tutoriallinkml

  Python

  •

  MIT License

  •1•8•0•0•Updated Aug 13, 2024Aug 13, 2024

• linkml-schemaorg

  Public
  Automated linkml rendering of schema.org

  schema-orglinkml

  Makefile

  •

  MIT License

  •1•6•3•0•Updated Jul 24, 2024Jul 24, 2024

• linkml-renderer

  Public
  Rendering of instance data as HTML, Markdown, Mermaid

  pythonhtmlmarkdown+ 4templatesmermaidlinkmlinstance-graphs

  Python

  •

  Apache License 2.0

  •0•7•2•0•Updated Jun 26, 2024Jun 26, 2024

• linkml-owl

  Public
  Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)

  templatesdesign-patternsowl+ 9ontologiesontology-generationontology-design-patternsmetaclasseslinkmljson2owlyaml2owl+ 2

  Python

  •2•16•13•0•Updated May 30, 2024May 30, 2024

• linkml-dataops

  Public
  Data API for LinkML instance data

  pythonapidatabase+ 4query-languagedata-modelinglinkmlchange-objects

  Python

  •1•5•1•0•Updated Feb 27, 2024Feb 27, 2024