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    • Genome browser hub for the T2T genomes and resources
      HTML
      32300Updated Jul 30, 2025Jul 30, 2025
    • HG002

      Public
      A complete diploid human genome
      512310Updated Jul 30, 2025Jul 30, 2025
    • TTT

      Public
      Python
      0100Updated Jul 28, 2025Jul 28, 2025
    • canu

      Public
      A single molecule sequence assembler for genomes large and small.
      C++
      17968532Updated Jul 17, 2025Jul 17, 2025
    • CHM13

      Public
      The complete sequence of a human genome
      101973250Updated Jul 14, 2025Jul 14, 2025
    • meryl

      Public
      A genomic k-mer counter (and sequence utility) with nice features.
      C
      14142360Updated Jul 4, 2025Jul 4, 2025
    • A collection of miscellaneous code used by Meryl, Canu and others.
      C
      3100Updated Jul 4, 2025Jul 4, 2025
    • MetaCompass: Reference-guided Assembly of Metagenomes
      Python
      1139120Updated Jun 26, 2025Jun 26, 2025
    • verkko

      Public
      Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
      Python
      32353190Updated Jun 26, 2025Jun 26, 2025
    • HG002 human reference genome issue tracking and polishing
      010290Updated Jun 3, 2025Jun 3, 2025
    • Primates

      Public
      Complete assemblies of non-human primate genomes
      45010Updated May 20, 2025May 20, 2025
    • Python
      1215390Updated May 8, 2025May 8, 2025
    • parsnp

      Public
      Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surroundin…
      C++
      27145290Updated Apr 29, 2025Apr 29, 2025
    • training

      Public
      Genome Assembly 102
      Shell
      21500Updated Apr 23, 2025Apr 23, 2025
    • anianns

      Public
      ANI based satellite annotation
      Python
      0910Updated Apr 17, 2025Apr 17, 2025
    • A tool for summarizing, extracting, generating and modifying DNA sequences.
      C
      42320Updated Dec 17, 2024Dec 17, 2024
    • C++
      610150Updated Dec 16, 2024Dec 16, 2024
    • Winnowmap

      Public
      Long read / genome alignment software
      C
      28294311Updated Nov 5, 2024Nov 5, 2024
    • MashMap

      Public
      A fast approximate aligner for long DNA sequences
      C++
      38282230Updated Oct 11, 2024Oct 11, 2024
    • MetaCarvel: A scaffolder for metagenomes
      C++
      171533Updated Sep 17, 2024Sep 17, 2024
    • merqury

      Public
      k-mer based assembly evaluation
      Shell
      20321320Updated Jun 28, 2024Jun 28, 2024
    • SALSA

      Public
      SALSA: A tool to scaffold long read assemblies with Hi-C data
      Python
      48188232Updated May 17, 2024May 17, 2024
    • rukki

      Public
      Extracting paths from assembly graphs
      Rust
      023180Updated Apr 26, 2024Apr 26, 2024
    • Regression test cases and results for Canu.
      Shell
      0000Updated Apr 5, 2024Apr 5, 2024
    • Test suite for Verkko.
      Perl
      0000Updated Jan 25, 2024Jan 25, 2024
    • CHM13 human reference genome issue tracking
      HTML
      32000Updated Jan 18, 2024Jan 18, 2024
    • Visualization tool for (meta)genome assembly graphs
      JavaScript
      8231241Updated Jan 3, 2024Jan 3, 2024
    • gingr

      Public
      C++
      514151Updated Dec 5, 2023Dec 5, 2023
    • Mash

      Public
      Fast genome and metagenome distance estimation using MinHash
      C++
      93417823Updated Oct 26, 2023Oct 26, 2023
    • MHAP

      Public
      MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities
      Java
      139600Updated Jun 27, 2022Jun 27, 2022