nextflow-io

All

106 repositories

nextflow
Public
A DSL for data-driven computational pipelines
docker groovy hello aws cloud bioinformatics pipeline nextflow hpc reproducible-research
Groovy
•
Apache License 2.0
•742•3.2k•421•90•Updated Nov 7, 2025Nov 7, 2025
training
Public
Nextflow training material
training learning tutorial workshop nextflow pipelines teaching workflows
Nextflow
•
Other
•254•195•24•16•Updated Nov 7, 2025Nov 7, 2025
vscode-language-nextflow
Public
Nextflow language support for Visual Studio Editor
nextflow vscode-extension
TypeScript
•
MIT License
•18•35•11•6•Updated Nov 7, 2025Nov 7, 2025
language-server
Public
The Nextflow language server
nextflow language-server-protocol
Java
•
Apache License 2.0
•4•24•34•9•Updated Nov 7, 2025Nov 7, 2025
nf-prov
Public
Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-Crate.
bioinformatics nextflow pipelines crates provenance workflows research-object biocompute-objects bco biocompute
Groovy
•
Apache License 2.0
•13•30•13•1•Updated Nov 7, 2025Nov 7, 2025
nf-co2footprint
Public
A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.
workflow bioinformatics analysis nextflow pipelines emissions co2 co2-footprint
HTML
•
Apache License 2.0
•12•23•8•4•Updated Nov 7, 2025Nov 7, 2025
plugins
Public
Nextflow plugins index repository
38•3•0•5•Updated Nov 7, 2025Nov 7, 2025
summit-website
Public
TypeScript
•5•2•1•1•Updated Nov 3, 2025Nov 3, 2025
nf-schema
Public
Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
workflow bioinformatics schema validation pipeline nextflow json-schema params parameter-validation nextflow-schema
Groovy
•
Apache License 2.0
•28•45•34•3•Updated Oct 27, 2025Oct 27, 2025
nf-nomad
Public
Hashicorp Nomad executor plugin for Nextflow
Groovy
•
Apache License 2.0
•4•3•5•0•Updated Oct 25, 2025Oct 25, 2025
nextflow-plugin-gradle
Public
Gradle plugin for making Nextflow plugins
Groovy
•
Apache License 2.0
•0•2•0•2•Updated Oct 24, 2025Oct 24, 2025
rnaseq-nf
Public
A proof of concept of RNAseq pipeline
genomics nextflow rnaseq
Nextflow
•
Apache License 2.0
•112•80•4•1•Updated Oct 21, 2025Oct 21, 2025
website
Public
Nextflow public web site
HTML
•113•8•1•12•Updated Oct 12, 2025Oct 12, 2025
nf-plugin-template
Public template
Template project for creating Nextflow plugins (beta)
Groovy
•
Apache License 2.0
•2•0•1•0•Updated Oct 8, 2025Oct 8, 2025
nf-parquet
Public
Plugin implementing the support for Apache Parquet files (experimental)
nextflow parquet
Groovy
•
Apache License 2.0
•1•3•0•0•Updated Oct 8, 2025Oct 8, 2025
nf-tower
Public
Nextflow plugin providing the support for Tower
Mozilla Public License 2.0
•1•1•0•0•Updated Oct 6, 2025Oct 6, 2025
nf-k8s
Public
Apache License 2.0
•0•0•0•0•Updated Oct 6, 2025Oct 6, 2025
nf-amazon
Public
Amazon Web Services plugin for Nextflow
Apache License 2.0
•2•1•1•0•Updated Oct 6, 2025Oct 6, 2025
nf-nim
Public
Experimental NVIDIA NIMs plugin
Groovy
•
Apache License 2.0
•1•0•5•1•Updated Oct 6, 2025Oct 6, 2025
schema-builder
Public
TypeScript
•0•2•1•0•Updated Oct 3, 2025Oct 3, 2025
schemas
Public
Specification of Nextflow schema
Shell
•
Apache License 2.0
•1•3•6•0•Updated Sep 30, 2025Sep 30, 2025
vim-language-nextflow
Public
Vim plugin for Nextflow
Vim Script
•
Apache License 2.0
•1•5•0•0•Updated Sep 16, 2025Sep 16, 2025
nf-sqldb
Public
SQL support plugin for Nextflow
Groovy
•
Apache License 2.0
•1•32•7•4•Updated Sep 15, 2025Sep 15, 2025
tree-sitter-nextflow
Public
JavaScript
•1•2•1•0•Updated Sep 10, 2025Sep 10, 2025
nf-azure
Public
Azure cloud plugin for Nextflow
Apache License 2.0
•1•2•0•0•Updated Sep 8, 2025Sep 8, 2025
nf-hello
Public archive
Nextflow plugin implementation skeleton
Groovy
•
Apache License 2.0
•28•11•0•1•Updated Sep 1, 2025Sep 1, 2025
nf-wave
Public
Wave provisioning containers plugin for Nextflow
2•0•6•0•Updated Aug 15, 2025Aug 15, 2025
nf-google
Public
Nextflow plugin providing the support for Google cloud
Apache License 2.0
•1•0•0•0•Updated Aug 15, 2025Aug 15, 2025
nf-codecommit
Public
Amazon CodeCommit plugin for Nextflow
1•0•0•0•Updated Aug 15, 2025Aug 15, 2025
nf-databricks
Public
Groovy
•
Apache License 2.0
•0•4•0•0•Updated Jul 16, 2025Jul 16, 2025