Repositories list

• impg

  Public

  pangenome/impg’s past year of commit activity
  implicit pangenome graph

  Rust

  •

  MIT License

  •10•77•0•2•Updated Nov 1, 2025Nov 1, 2025

• genotypify

  Public

  pangenome/genotypify’s past year of commit activity
  Genotyping lots of samples with big pangenomes

  Python

  •

  MIT License

  •0•10•0•0•Updated Oct 30, 2025Oct 30, 2025

• allwave

  Public

  pangenome/allwave’s past year of commit activity
  simple interface for all-way alignment with biWFA

  Rust

  •

  MIT License

  •0•2•0•9•Updated Oct 27, 2025Oct 27, 2025

• sweepga

  Public

  pangenome/sweepga’s past year of commit activity
  plane sweep filtering genome alignments

  Rust

  •0•11•0•0•Updated Oct 26, 2025Oct 26, 2025

• fastga-rs

  Public

  pangenome/fastga-rs’s past year of commit activity
  fastga rust library

  Rust

  •0•0•0•0•Updated Oct 26, 2025Oct 26, 2025

• povu

  Public

  pangenome/povu’s past year of commit activity
  A toolkit for exploring regions of variation in a variation graph

  C++

  •

  MIT License

  •3•12•3•2•Updated Oct 26, 2025Oct 26, 2025

• onecode-rs

  Public

  pangenome/onecode-rs’s past year of commit activity
  Rust bindings for ONEcode - a data representation format for genomic data

  C

  •0•0•0•0•Updated Oct 26, 2025Oct 26, 2025

• odgi

  Public

  pangenome/odgi’s past year of commit activity
  Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

  C++

  •

  MIT License

  •43•225•54•8•Updated Oct 23, 2025Oct 23, 2025

• gafpack

  Public

  pangenome/gafpack’s past year of commit activity
  convert variation graph alignments to coverage maps over nodes

  Rust

  •

  MIT License

  •2•26•0•0•Updated Oct 23, 2025Oct 23, 2025

• seqrush

  Public

  pangenome/seqrush’s past year of commit activity
  online variation graph induction

  Rust

  •

  MIT License

  •1•11•0•0•Updated Oct 21, 2025Oct 21, 2025

• impop

  Public

  pangenome/impop’s past year of commit activity
  Python

  •0•6•0•0•Updated Oct 19, 2025Oct 19, 2025

• alnviz

  Public

  pangenome/alnviz’s past year of commit activity
  Fast, interactive alignment viewer for pangenome analysis

  C

  •

  Other

  •0•3•0•0•Updated Oct 17, 2025Oct 17, 2025

• HPRCv2

  Public

  pangenome/HPRCv2’s past year of commit activity
  pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2

  R

  •

  MIT License

  •1•15•0•2•Updated Oct 14, 2025Oct 14, 2025

• seqwish

  Public

  pangenome/seqwish’s past year of commit activity
  alignment to variation graph inducer

  C++

  •

  MIT License

  •20•150•31•3•Updated Oct 9, 2025Oct 9, 2025

• alnstat-rs

  Public

  pangenome/alnstat-rs’s past year of commit activity
  Rust

  •0•1•0•0•Updated Oct 8, 2025Oct 8, 2025

• HackPRC25

  Public

  pangenome/HackPRC25’s past year of commit activity
  Biohackathon following the HPRC25 conference

  HTML

  •0•1•0•0•Updated Oct 8, 2025Oct 8, 2025

• seqwish-paper

  Public

  pangenome/seqwish-paper’s past year of commit activity
  Unbiased pangenome graphs

  TeX

  •

  MIT License

  •0•3•0•0•Updated Oct 5, 2025Oct 5, 2025

• lifetree

  Public
  hard mode all genomes alignment

  Shell

  •3•6•0•0•Updated Sep 25, 2025Sep 25, 2025

• MemPanG26

  Public

  pangenome/MemPanG26’s past year of commit activity
  Computational Pangenomics in Memphis

  HTML

  •

  MIT License

  •4•1•0•0•Updated Sep 3, 2025Sep 3, 2025

• pggb

  Public

  pangenome/pggb’s past year of commit activity
  the pangenome graph builder

  Shell

  •

  MIT License

  •45•460•53•0•Updated Aug 3, 2025Aug 3, 2025

• agc-rs

  Public

  pangenome/agc-rs’s past year of commit activity
  agc rust bridge

  C++

  •

  MIT License

  •2•1•0•0•Updated Jul 31, 2025Jul 31, 2025

• gfalace

  Public archive

  pangenome/gfalace’s past year of commit activity
  lace up GFA files using panSN path name sub-ranges to coordinate the lacing

  Rust

  •

  MIT License

  •1•12•2•1•Updated Jul 30, 2025Jul 30, 2025

• smoothxg

  Public

  pangenome/smoothxg’s past year of commit activity
  linearize and simplify variation graphs using blocked partial order alignment

  C++

  •

  Other

  •8•59•7•2•Updated Jul 22, 2025Jul 22, 2025

• forgenom_summerschool2025

  Public

  pangenome/forgenom_summerschool2025’s past year of commit activity
  PhD School on Modern Bioinformatics towards Pangenomics

  MIT License

  •0•0•0•0•Updated Jul 13, 2025Jul 13, 2025

• poasta

  Public

  pangenome/poasta’s past year of commit activity
  Fast and exact gap-affine partial order alignment

  Rust

  •

  BSD 3-Clause "New" or "Revised" License

  •5•0•0•0•Updated Jul 8, 2025Jul 8, 2025

• vcfbub

  Public

  pangenome/vcfbub’s past year of commit activity
  use variant nesting information to flter overlapping sites from vg deconstruct output

  Rust

  •

  MIT License

  •2•28•2•1•Updated Jun 12, 2025Jun 12, 2025

• manyfa

  Public

  pangenome/manyfa’s past year of commit activity
  bedtools getfasta / samtools faidx for pangenomes worth of FASTA files

  C++

  •0•7•0•0•Updated May 15, 2025May 15, 2025

• MemPanG25

  Public

  pangenome/MemPanG25’s past year of commit activity
  Computational Pangenomics in Memphis

  HTML

  •

  MIT License

  •4•1•0•0•Updated May 14, 2025May 14, 2025

• pggb-workshop

  Public

  pangenome/pggb-workshop’s past year of commit activity
  tutorial on pggb

  7•35•1•0•Updated Jan 13, 2025Jan 13, 2025

• HumanPangenomeBYOD2024

  Public

  pangenome/HumanPangenomeBYOD2024’s past year of commit activity
  Material for the Human Pangenome Bring Your Own Data (BYOD) analysis Workshop 2024, October 21-25 in Cape Town, South Africa.

  MIT License

  •2•7•0•0•Updated Oct 29, 2024Oct 29, 2024