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@qiime2 QIIME 2

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    79 repositories

    • library

      Public
      A website for sharing QIIME 2 Plugins
      Svelte
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•3•1•Updated Jul 24, 2025Jul 24, 2025

    • q2-composition

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •27•6•6•0•Updated Jul 23, 2025Jul 23, 2025

    • distributions

      Public
      Makefile
      •
      BSD 3-Clause "New" or "Revised" License
      •7•3•7•5•Updated Jul 23, 2025Jul 23, 2025

    • qiime2

      Public
      Source for the QIIME 2 Framework (Q2F).
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •251•508•65•8•Updated Jul 22, 2025Jul 22, 2025

    • q2-types

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •42•17•26•1•Updated Jul 22, 2025Jul 22, 2025

    • q2-stats

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•1•4•1•Updated Jul 22, 2025Jul 22, 2025

    • q2-sample-classifier

      Public
      QIIME 2 plugin for machine learning prediction of sample data.
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •34•6•15•1•Updated Jul 22, 2025Jul 22, 2025

    • q2-quality-control

      Public
      A QIIME 2 plugin for quality control of sequence and feature data
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•4•7•1•Updated Jul 22, 2025Jul 22, 2025

    • q2-longitudinal

      Public
      QIIME 2 plugin for paired sample comparisons
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•9•28•2•Updated Jul 22, 2025Jul 22, 2025

    • q2-feature-classifier

      Public
      QIIME 2 plugin supporting taxonomic classification
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •40•19•9•1•Updated Jul 22, 2025Jul 22, 2025

    • q2-emperor

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •21•1•4•1•Updated Jul 22, 2025Jul 22, 2025

    • q2-demux

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •22•1•10•3•Updated Jul 22, 2025Jul 22, 2025

    • q2-deblur

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •21•2•7•2•Updated Jul 22, 2025Jul 22, 2025

    • q2-dada2

      Public
      QIIME 2 plugin wrapping DADA2
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •37•21•11•2•Updated Jul 22, 2025Jul 22, 2025

    • q2-cutadapt

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•3•3•1•Updated Jul 22, 2025Jul 22, 2025

    • q2view

      Public
      A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•2•2•Updated Jul 21, 2025Jul 21, 2025

    • amplicon-docs

      Public
      Source for QIIME 2 amplicon documentation.
      Makefile
      •0•1•6•0•Updated Jul 21, 2025Jul 21, 2025

    • moving-pictures-tutorial

      Public
      Moving Pictures Tutorial source
      Makefile
      •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • q2doc

      Public
      A MyST executable plugin for documenting QIIME 2 plugins.
      Python
      •
      Other
      •1•0•4•0•Updated Jul 16, 2025Jul 16, 2025

    • library-catalog

      Public
      Stores a list of the repos that are included in the QIIME 2 library
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•2•Updated Jul 15, 2025Jul 15, 2025

    • homepage

      Public
      QIIME 2 Homepage
      Astro
      •
      MIT License
      •0•0•0•0•Updated Jul 15, 2025Jul 15, 2025

    • galaxy-tools

      Public
      Official QIIME 2 tools for Galaxy
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•1•10•3•Updated Jul 15, 2025Jul 15, 2025

    • q2-diversity

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •45•3•45•1•Updated Jul 14, 2025Jul 14, 2025

    • q2cli

      Public
      Command line interface for QIIME 2
      hacktoberfestq2interface
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •26•19•11•0•Updated Jul 14, 2025Jul 14, 2025

    • q2-fragment-insertion

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•13•12•0•Updated Jul 14, 2025Jul 14, 2025

    • action-library-packaging

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•0•Updated Jul 10, 2025Jul 10, 2025

    • q2-taxa

      Public
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •29•3•43•0•Updated Jul 9, 2025Jul 9, 2025

    • q2-quality-filter

      Public
      Quality filtering for QIIME2
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •15•1•3•0•Updated Jul 9, 2025Jul 9, 2025

    • q2-vsearch

      Public
      vsearch plugin for QIIME 2
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •21•6•8•0•Updated Jul 9, 2025Jul 9, 2025

    • q2-sapienns

      Public
      hacktoberfestqiime2-plugin
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•1•0•Updated Jul 9, 2025Jul 9, 2025