Repositories list

• release-jenkins-utils

  Public
  Data-release-pipeline: Utilities repository that contains files for initializing Release via Jenkins and general-use scripts used in Release

  releasedata-release-pipeline

  Groovy

  •

  Apache License 2.0

  •1•0•5•0•Updated Jun 23, 2025Jun 23, 2025

• PathwayBrowser

  Public
  TypeScript

  •0•0•0•0•Updated Jun 23, 2025Jun 23, 2025

• graph-core

  Public
  Models the Reactome knowledgebase into a interconnected graph

  Java

  •8•20•2•2•Updated Jun 21, 2025Jun 21, 2025

• Website

  Public
  Contains the code and configuration for the website

  PHP

  •

  GNU General Public License v2.0

  •2•5•1•0•Updated Jun 21, 2025Jun 21, 2025

• release-orthoinference

  Public
  Data-release-pipeline: Orthology projection of human reactions and pathways to non-human species

  releasedata-release-pipelinemysql-release

  Java

  •0•0•0•2•Updated Jun 20, 2025Jun 20, 2025

• analysis-report

  Public
  Java

  •

  GNU Affero General Public License v3.0

  •2•1•0•0•Updated Jun 19, 2025Jun 19, 2025

• analysis-service

  Public
  A RESTful API to access pathway analysis tools

  Java

  •3•4•1•1•Updated Jun 19, 2025Jun 19, 2025

• content-service

  Public
  The new Reactome REST API to access the data

  Java

  •6•12•1•1•Updated Jun 19, 2025Jun 19, 2025

• analysis-core

  Public
  Pathway enrichment and expression analysis as well as species comparison tool

  Java

  •6•3•1•0•Updated Jun 19, 2025Jun 19, 2025

• reactome_galaxy

  Public
  This is for running the analysis service

  Kotlin

  •

  Apache License 2.0

  •0•0•3•0•Updated Jun 17, 2025Jun 17, 2025

• search-indexer

  Public
  Java

  •3•0•0•1•Updated Jun 16, 2025Jun 16, 2025

• interaction-exporter

  Public
  Exports molecular interactions inferred from Reactome content

  Java

  •1•5•0•1•Updated Jun 16, 2025Jun 16, 2025

• event-pdf

  Public
  Generates the Reactome book

  Java

  •

  GNU Affero General Public License v3.0

  •1•1•0•0•Updated Jun 16, 2025Jun 16, 2025

• diagram-exporter

  Public
  Exporter of the diagram layout to different formats (pptx, svg, png, gif, jpg, sbgn)

  Java

  •3•1•2•2•Updated Jun 16, 2025Jun 16, 2025

• release-biomodels

  Public
  Data-release-pipeline: Insertion of BioModels identifiers cross-references (data generated by https://github.com/reactome/biomodels-mapper) for Pathway instances

  releasedata-release-pipelinemysql-release

  Java

  •1•0•2•0•Updated Jun 13, 2025Jun 13, 2025

• disease-digester

  Public
  To represent the disease-gene binary relationship with a REACTOME overlay

  JavaScript

  •1•1•0•1•Updated Jun 11, 2025Jun 11, 2025

• logic-network-generator

  Public
  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Jun 10, 2025Jun 10, 2025

• CuratorTool

  Public
  The Reactome Java API for the relational database and the Curator Tool

  Java

  •7•3•11•5•Updated Jun 10, 2025Jun 10, 2025

• graph-qa

  Public
  Used to report possible data inconsistencies

  Java

  •1•1•0•0•Updated Jun 9, 2025Jun 9, 2025

• graph-importer

  Public
  Converts the Reactome knowledgebase into a interconnected graph

  Java

  •4•8•0•0•Updated Jun 9, 2025Jun 9, 2025

• release-orthopairs

  Public
  Data-release-pipeline: Retrieval of homology data (human to other species) from PANTHER (http://www.pantherdb.org/)

  releasedata-release-pipeline

  Java

  •0•0•2•2•Updated Jun 6, 2025Jun 6, 2025

• release-update-dois

  Public
  Data-release-pipeline: Updates DOIs of pathways that were updated significantly between releases (these pathways will be tagged as needing a value in their doi attribute)

  releasedata-release-pipelinemysql-release

  Java

  •0•1•0•0•Updated Jun 6, 2025Jun 6, 2025

• release-download-directory

  Public
  Data-release-pipeline: Generation of files for the Reactome website download directory

  releasedata-release-pipelinemysql-release

  Java

  •1•0•10•0•Updated Jun 4, 2025Jun 4, 2025

• release-go-update

  Public
  Data-release-pipeline: Synchronization of gk_central GO instances with Gene Ontology (http://geneontology.org/)

  releasedata-release-pipelinemysql-release

  Java

  •0•1•4•1•Updated Jun 1, 2025Jun 1, 2025

• icon-validator

  Public
  Validate the structure and values of icon files

  Java

  •1•0•0•2•Updated May 30, 2025May 30, 2025

• data-content

  Public
  Java

  •2•1•0•0•Updated May 29, 2025May 29, 2025

• statistics-generator

  Public
  Cypher queries to generate automatically release statistics

  R

  •

  MIT License

  •0•1•2•0•Updated May 27, 2025May 27, 2025

• data-export

  Public
  Creates the files to be placed in the download section

  Java

  •2•2•2•2•Updated May 11, 2025May 11, 2025

• sbml-exporter

  Public
  Java

  •1•0•0•0•Updated May 11, 2025May 11, 2025

• interactors-core

  Public
  Java

  •2•0•0•1•Updated May 11, 2025May 11, 2025