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@subwaystation subwaystation commented Oct 17, 2022

  • Clean existing functionality.
  • Extensive refactoring.
  • Skeleton.
  • RISE.
  • Run along the path.
  • Fix ZIPF parts.
  • Functional odgi sort tests.
  • Performance tests. Compare with XP.
  • Functional odgi flip tests.
  • Functional odgi groom tests.
  • Functional odgi tips tests.
  • Functional odgi untangle tests.
  • ...

@subwaystation subwaystation changed the title A sampled step index implementation for the PG-SGD algorithm A sampled step index implementation of the PG-SGD algorithm Oct 17, 2022
step_handle_t cur_step;
cur_step = graph.path_begin(path);
bool lost = true;
// has_next_step is very, very costly and already unfeasable for yeast!
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:)

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2 participants