API documentation

The phyloDB framework provides a secured API for phylogenetic data management on top of the Neo4j graph database, and the foundation to deploy and run different inference and visualization optimizing algorithms over the data.

Endpoints	HTTP Methods
/users	GET
/users/{user}	GET, PUT, DELETE
/projects	GET, POST
/projects/{project}	GET, PUT, DELETE
/projects/{project}/datasets	GET, POST
/projects/{project}/datasets/{dataset}	GET, PUT, DELETE
/projects/{project}/datasets/{dataset}/profiles	GET
/projects/{project}/datasets/{dataset}/profiles/{profile}	GET, PUT, DELETE
/projects/{project}/datasets/{dataset}/profiles/files	GET, PUT, POST
/projects/{project}/datasets/{dataset}/isolates	GET
/projects/{project}/datasets/{dataset}/isolates/{isolate}	GET, PUT, DELETE
/projects/{project}/datasets/{dataset}/isolates/files	GET, PUT, POST
/projects/{project}/datasets/{dataset}/inferences	GET, POST
/projects/{project}/datasets/{dataset}/inferences/{inference}	GET, DELETE
/projects/{project}/datasets/{dataset}/inferences/{inference}/visualizations	GET
/projects/{project}/datasets/{dataset}/inferences/{inference}/visualizations/{visualization}	GET, DELETE
/projects/{project}/jobs	GET, POST
/projects/{project}/jobs/{job}	DELETE
/taxa	GET
/taxa/{taxon}	GET, PUT, DELETE
/taxa/{taxon}/loci	GET
/taxa/{taxon}/loci/{locus}	GET, PUT, DELETE
/taxa/{taxon}/loci/{locus}/alleles	GET
/taxa/{taxon}/loci/{locus}/alleles/{allele}	GET, PUT, DELETE
/taxa/{taxon}/loci/{locus}/alleles/files	GET, PUT, POST
/taxa/{taxon}/schemas	GET
/taxa/{taxon}/schemas/{schema}	GET, PUT, DELETE