MP Biopath Pathway Generator

Generate denormalized pathways for MP Biopath.

Setup

Prerequisites

• Python 3
• Poetry

Installation

1. Clone the repository:

   git clone https://github.com/reactome/mp-biopath-pathway-generator.git

2. Generate the files:

   poetry run python create-denormalized-pathways.py

### Run Mypy

```bash
poetry run mypy --ignore-missing-imports .

Run fake8

poetry run flake8 .

Create db-id-name-mapping-file.tsv

python src/create-db-id-name-mapping-file.py