Version bump, changelog, contribution metadata

.nf-core.yml

@@ -43,4 +43,4 @@ template:
   outdir: .
   skip_features:
     - igenomes
-  version: 0.7.1
+  version: 0.8.0

CHANGELOG.md

@@ -3,6 +3,22 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [[0.8.0](https://github.com/sanger-tol/blobtoolkit/releases/tag/0.8.0)] –  – [2025-05-02]
+
+### Enhancements & fixes
+
+- Runtime of the blast commands is now capped at 12 hours
+- nf-core template upgrade (to version 3.2.1)
+- Documentation fixes (broken links)
+
+### Parameters
+
+| Old parameter | New parameter          |
+| ------------- | ---------------------- |
+|               | --busco_gene_predictor |
+
+> **NB:** Parameter has been **updated** if both old and new parameter information is present. </br> **NB:** Parameter has been **added** if just the new parameter information is present. </br> **NB:** Parameter has been **removed** if new parameter information isn't present.
+
 ## [[0.7.1](https://github.com/sanger-tol/blobtoolkit/releases/tag/0.7.1)] – Psyduck (patch 1) – [2025-03-29]
 
 ### Enhancements & fixes

CITATION.cff

@@ -1,48 +1,69 @@
-cff-version: 1.2.0
-title: sanger-tol/blobtoolkit v0.7.1
 authors:
-  - family-names: Butt
+  - affiliation: Wellcome Sanger Institute
+    family-names: Butt
     given-names: Zaynab
-    affiliation: Wellcome Sanger Institute
-    orcid: 0009-0009-7934-8440
-  - family-names: Chafin
+    orcid: https://orcid.org/0009-0009-7934-8440
+    website: https://github.com/zb32
+  - affiliation: Wellcome Sanger Institute
+    email: [email protected]
+    family-names: Chafin
     given-names: Tyler
-    affiliation: Wellcome Sanger Institute
-    orcid: 0000-0001-8687-5905
-  - family-names: Challis
+    orcid: https://orcid.org/0000-0001-8687-5905
+    website: https://github.com/tkchafin
+  - affiliation: Wellcome Sanger Institute
+    family-names: Challis
     given-names: Rich
-    affiliation: Wellcome Sanger Institute
-    orcid: 0000-0002-3502-1122
-  - family-names: Kumar
+    orcid: https://orcid.org/0000-0002-3502-1122
+    website: https://github.com/rjchallis
+  - affiliation: Wellcome Sanger Institute
+    email: [email protected]
+    family-names: Kumar
     given-names: Sujai
-    affiliation: Wellcome Sanger Institute
-    orcid: 0000-0001-5902-6641
-  - family-names: Muffato
+    orcid: https://orcid.org/0000-0001-5902-6641
+    website: https://github.com/sujaikumar
+  - affiliation: Wellcome Sanger Institute
+    email: [email protected]
+    family-names: Muffato
     given-names: Matthieu
-    affiliation: Wellcome Sanger Institute
-    orcid: 0000-0002-7860-3560
-  - family-names: Pointon
-    given-names: Damon-Lee
-    affiliation: Wellcome Sanger Institute
-    orcid: 0000-0003-2949-6719
-  - family-names: Qi
+    orcid: https://orcid.org/0000-0002-7860-3560
+    website: https://github.com/muffato
+  - affiliation: Wellcome Sanger Institute
+    email: [email protected]
+    family-names: Qi
     given-names: Guoying
-    orcid: 0000-0003-1262-8973
-    affiliation: Wellcome Sanger Institute
-  - family-names: "Ramos D\xEDaz"
+    orcid: https://orcid.org/0000-0003-1262-8973
+    website: https://github.com/gq1
+  - email: [email protected]
+    family-names: "Ramos D\xEDaz"
     given-names: Alexander
-    affiliation: Wellcome Sanger Institute
-    orcid: 0000-0001-6410-3349
-  - family-names: Surana
+    orcid: https://orcid.org/0000-0001-6410-3349
+    website: https://github.com/alxndrdiaz
+  - affiliation: Wellcome Sanger Institute
+    email: [email protected]
+    family-names: Sims
+    given-names: Yumi
+    orcid: https://orcid.org/0000-0003-4765-4872
+    website: https://github.com/yumisims
+  - affiliation: Wellcome Sanger Institute
+    email: [email protected]
+    family-names: Surana
     given-names: Priyanka
-    affiliation: Wellcome Sanger Institute
-    orcid: 0000-0002-7167-0875
-  - family-names: Yates
+    orcid: https://orcid.org/0000-0002-7167-0875
+    website: https://github.com/priyanka-surana
+  - affiliation: Wellcome Sanger Institute
+    email: [email protected]
+    family-names: Yates
     given-names: Bethan
-    affiliation: Wellcome Sanger Institute
-    orcid: 0000-0003-1658-1762
-doi: 10.5281/zenodo.13758882
-repository-code: "https://github.com/sanger-tol/blobtoolkit"
+    orcid: https://orcid.org/0000-0003-1658-1762
+    website: https://github.com/BethYates
+cff-version: 1.2.0
+date-released: "2025-04-25"
+doi: 10.5281/zenodo.7949058
 license: MIT
-version: 0.7.1
-date-released: "2024-09-13"
+message: If you use this software, please cite it using the metadata from this file
+  and all references from CITATIONS.md .
+repository-code: https://github.com/sanger-tol/blobtoolkit
+title: sanger-tol/blobtoolkit v0.8.0 - 
+type: software
+url: https://pipelines.tol.sanger.ac.uk/blobtoolkit
+version: 0.8.0

nextflow.config

@@ -278,7 +278,7 @@ manifest {
             affiliation: 'Wellcome Sanger Institute',
             github: 'https://github.com/rjchallis',
             contribution: ['author'],
-            orcid: 'https://orcid.org/0000-0002-3502-112'
+            orcid: 'https://orcid.org/0000-0002-3502-1122'
         ],
         [
             name: 'Kumar, Sujai',
@@ -307,6 +307,13 @@ manifest {
             contribution: ['author'],
             orcid: 'https://orcid.org/0000-0001-6410-3349'
         ],
+        [
+            name: 'Sims, Yumi',
+            affiliation: 'Wellcome Sanger Institute',
+            github: 'https://github.com/yumisims',
+            contribution: ['contributor'],
+            orcid: 'https://orcid.org/0000-0003-4765-4872'
+        ],
         [
             name: 'Surana, Priyanka',
             affiliation: 'Wellcome Sanger Institute',
@@ -327,7 +334,7 @@ manifest {
     mainScript      = 'main.nf'
     defaultBranch   = 'main'
     nextflowVersion = '!>=24.04.2'
-    version         = '0.7.1'
+    version         = '0.8.0'
     doi             = '10.5281/zenodo.7949058'
 }