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sciencegenome/README.md
  • European Union Skilled Blaue Karte. Curriculum Vitae | Scopus | Web of Science
  • Lead data analyst/bioinformatician, developed, establishment and managed computing clusters in all the employment.
  • Extremely collaborative,communicative, approachable, motivated, solution oriented, responsive, and initiative taker.
  • All code and ideas concieved and written by me unless specified.
  • System HPC | Database | Deep Learning and Web: Python, RUST, PyTorch, Tensorflow, XGBoost, Scikit-learn, Streamlit, Django, Flask, HTMx, Rocket, Actix, Leptos, RUST, LDAP, Bash, Systemd, Apptainer, Docker, SQlite3, PostgresSQL, SLURM.
  • 2023-2024: Universitat Potsdam,Germany, I Benchmarked PacBioHifi, RUST including GraphQL,Web-RUST.
  • 2021-2023: Python Machine/Deep learning.
  • 2020-2021: Finnish Museum of Natural History, Finland. I completed genome assembly, annotations, markers genes, ITS, and phylogenomics of over 500 fungal species using NextSeq.
  • 2017-2021: Finnish Museum of Natural History, Finland, where I completed pacbio sequencing, assembly, annotations, organelle genomes and evolutionary/phylogenomic/comparative genomics approaches of lower plants Coleochaete orbicularis, Blasia pusilla, Chaetospiridium orbicularis, Polytrichum commune, Mallomonas, and Cryptomonas. Additionally, I worked for collaboration with Edinburgh UK, to analyse the PAFTOL species and the chloroplast genomes of the Ambrosia clade from Norway.
  • 2016-2017: University of Connecticut, USA, where I analyzed the Douglas fir genome from genome annotation to the phylogenomics.
  • 2014–2016: University of Technology, Sydney, Australia, where I developed computational methods for seagrasses.
  • 2011-2014: Fondazione Edmund Mach, Italy, where I developed and analyzed bioinformatics methods for nuclear and organelle genomes, metagenomics from fungal and bacterial both whole genome as well as 16S and ITS sequencing.

Pinned Loading

  1. python-tairaccession python-tairaccession Public

    python package for arabidopsis genome analysis

    Python

  2. rust-samtools-genomeview rust-samtools-genomeview Public

    rust-samtools-genomeview

    Rust

  3. rust-alignment-viewer rust-alignment-viewer Public

    rust embedded approach for genome alignments

    Rust

  4. rust-bedtools-pangenome-vcf rust-bedtools-pangenome-vcf Public

    rust pangenome bedtools vcf

    Rust

  5. rust-pangenome-graph-analyze rust-pangenome-graph-analyze Public

    rust pangenome graph analyze

    Rust

  6. rust-bedtools-pangenome-single-merge rust-bedtools-pangenome-single-merge Public

    rust bedtools single merge pangenome

    Rust