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Fix group_abundance#463

Merged
grst merged 11 commits intomainfrom
refactor-group-abundance
Aug 12, 2025
Merged

Fix group_abundance#463
grst merged 11 commits intomainfrom
refactor-group-abundance

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@grst grst commented Nov 8, 2023

Closes #452
Closes #641

  • CHANGELOG.md updated
  • Tests added (For bug fixes or new features)
  • Tutorial updated (if necessary)

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codecov bot commented Nov 8, 2023

Codecov Report

Attention: 1 lines in your changes are missing coverage. Please review.

Comparison is base (84f390f) 80.50% compared to head (7859288) 80.51%.

Files Patch % Lines
src/scirpy/tl/_chain_qc.py 90.90% 1 Missing ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##             main     #463   +/-   ##
=======================================
  Coverage   80.50%   80.51%           
=======================================
  Files          49       49           
  Lines        4012     4019    +7     
=======================================
+ Hits         3230     3236    +6     
- Misses        782      783    +1     

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... that occured when airr and gex modalities did not fully align.
@grst grst changed the title Refactor group_abundance Fix group_abundance Aug 12, 2025
@grst grst marked this pull request as ready for review August 12, 2025 06:12
@grst grst merged commit 8e02685 into main Aug 12, 2025
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@grst grst deleted the refactor-group-abundance branch August 12, 2025 06:45
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Combining multiple samples and have problems in TCR control ir.tl.chain_qc doesn't mark cells with no IR

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