Release v5.2.0 (#166)

* update node configurations in README * bump pipeline version * update README.md * remove asterisk --------- Co-authored-by: Mootor <mmootor@ip-0A125967.rhxrlfvjyzbupc03cc22jkch3c.xx.internal.cloudapp.net>
uclahs-cds · Jul 5, 2024 · 83ea1cc · 83ea1cc
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -4,6 +4,10 @@ All notable changes to the call-gSV pipeline.
 ---
 
 ## [Unreleased]
+
+---
+
+## [5.2.0] - 2024-07-03
 ### Added
 - Add `methods.modify_base_allocations()` to update resource allocation
 

diff --git a/README.md b/README.md
@@ -31,10 +31,11 @@ The call-gSV nextflow pipeline, calls structural variants (SVs) and copy number
 
 | Config File | Available Node cpus / memory | Designated Process 1; cpus / memory | Designated Process 2; cpus / memory | Designated Process 3; cpus / memory |
 |:------------|:---------|:-------------------------|:-------------------------|:-------------------------|
-| `F2.config` | 2 / 3 GB | call_gSV_Delly; 1 / 2 GB | call_gSV_Manta; 1 / 2 GB\* | validate_file; 1 / 1 GB |
-| `F32.config` | 32 / 62.8 GB | call_gSV_Delly; 1 / 30 GB | call_gSV_Manta; 1 / 30 GB | validate_file; 1 / 1 GB |
-| `F72.config` | 72 / 136.8 GB | call_gSV_Delly; 1 / 65 GB | call_gSV_Manta; 1 / 65 GB | validate_file; 1 / 1 GB |
-| `M64.config` | 64 / 950 GB | call_gSV_Delly; 1 / 470 GB | call_gSV_Manta; 1 / 470 GB | validate_file; 1 / 1 GB |
+| `F2.config` | 2 / 3 GB | call_gSV_Delly; 1 / 2 GB | call_gCNV_Delly; 1 / 2 GB | call_gSV_Manta; 1 / 2 GB\* |
+| `F16.config` | 16 / 26 GB | call_gSV_Delly; 1 / 8 GB | call_gCNV_Delly; 1 / 8 GB | call_gSV_Manta; 6 / 8 GB |
+| `F32.config` | 32 / 62.8 GB | call_gSV_Delly; 1 / 15 GB | call_gCNV_Delly; 1 / 15 GB | call_gSV_Manta; 12 / 15 GB |
+| `F72.config` | 72 / 136.8 GB | call_gSV_Delly; 1 / 30 GB | call_gCNV_Delly; 1 / 30 GB | call_gSV_Manta; 24 / 30 GB |
+| `M64.config` | 64 / 950 GB | call_gSV_Delly; 1 / 60 GB | call_gCNV_Delly; 1 / 60 GB | call_gSV_Manta; 30 / 60 GB |
 ---
 \* Manta SV calling wouldn't work on an F2 node due to incompatible resources. In order to test the pipeline for tasks not relevant to Manta, please set `run_manta = false` in the sample specific [config](config/template.config) file.
 

diff --git a/nextflow.config b/nextflow.config
@@ -4,5 +4,5 @@ manifest {
     name = 'call-gSV'
     author = 'Yu Pan, Tim Sanders, Yael Berkovich, Mohammed Faizal Eeman Mootor'
     description = 'A pipeline to call germline structural variants utilizing Delly and Manta'
-    version = '5.1.0'
+    version = '5.2.0'
 }