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Replace string serialisation with enum for HostSex categories #849

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Replace string serialisation with enum for HostSex categories #849

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23 changes: 15 additions & 8 deletions src/mixs/schema/mixs.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -437,6 +437,16 @@ enums:
kmer similarity:
other:
provirus:
HostSexEnum:
permissible_values:
female:
hermaphrodite:
non-binary:
male:
transgender:
transgender (female to male):
transgender (male to female):
undeclared:
HostSpecificityEnum:
permissible_values:
family-specific:
Expand Down Expand Up @@ -8494,15 +8504,12 @@ slots:
description: Gender or physical sex of the host
title: host sex
comments:
- example of non-binary from Excel sheets does not match any of the enumerated
values
- example of non-binary from Excel sheets does not match any of the enumerated
values
keywords:
- host
- host.
string_serialization: '[female|hermaphrodite|non-binary|male|transgender|transgender
(female to male)|transgender (male to female)

|undeclared]'
- host
- host.
range: HostSexEnum
slot_uri: MIXS:0000811
host_shape:
description: Morphological shape of host
Expand Down
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