v1.8.0-rc1

What's Changed

• Using checkqc illumina parser for bclconvert by @nkongenelly in #19
• Bump version tag and pin checkqc version by @matrulda in #20

Full Changelog: v1.7.0...v1.8.0-rc1

v1.7.0

What's Changed

• Dataops 832 olink cluster info by @nkongenelly in #16

New Contributors

• @nkongenelly made their first contribution in #16

Full Changelog: v1.6.3...v1.7.0-rc1

What's Changed

• Implementing total_clusters_raw similar to as total_clusters_pf by @nkongenelly in #17

Full Changelog: v1.7.0-rc1...v1.7.0-rc2

Add support for NovaSeq X Plus

This version adds support for the new NovaSeq X Plus instrument.

Refactor lane level statistics to add olink support

This release refactors lane-level statistics generation logic in order to:

• make the code more readable
• add support for olink runfolders

Support for the mean-q metric has been dropped as it seems to be a remnant of Sisyphus that is no longer used.

This release also upgrades the version of pip used for running tests, fixing a security issue.

Refactor lane level statistics to add olink support

This release refactors lane-level statistics generation logic in order to:

• make the code more readable
• add support for olink runfolders

Support for the mean-q metric has been dropped as it seems to be a remnant of Sisyphus that is no longer used.

This release also upgrades the version of pip used for running tests, fixing a security issue.

Bug fix: Bump the version to 1.6.1

v1.6.1

Bump version to 1.6.1

Introducing atac-seq-mode

There is now the possibility of using --atac-seq-mode which will gather the information on how to number the reads from Stats.json rather than from Interop as is normally the case.

Updated interop dependency for iSeq support

This release solves a problem where projman_filler would fail when trying to gather statistics for an iSeq run. This was caused by a bug in illumina/interop that has been fixed in v1.1.5.

Support for empty lanes

Minor update:
Fixes problem where projman_filler would crash if there where lanes with no clusters pf.

Support for multiple sample IDs per sample name

Minor update:
projman_fillercan now handle case where a sample has multiple sample IDs in the same lane.