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[Project] Create a map-back-profile
#193 · GallVp opened on Mar 13, 2025
3
[Project][HiC] Add HiC contact maps for combined haps
#128 · christinawu2008 opened on Sep 16, 2024
2
[Project] Phasing approaches for consideration
#261 · CeciliaDeng opened on Jul 16, 2025

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[Project] Phasing approaches for consideration

#261

· CeciliaDeng opened

on Jul 16, 2025

Create a Nextflow module for Winnowmap

#260

· GallVp opened

on Jul 15, 2025

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Automatically add the <code>-n</code> flag to <code>hic_juicer_tools_pre_ext_args</code> when the HiC assembly mode is true

#258

· GallVp opened

on Jul 14, 2025

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Allow <code>tags</code> as a parameter and set defaults for test dataset

#254

· GallVp opened

on Jul 11, 2025

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Make variant calling separately optional

#253

· GallVp opened

on Jul 3, 2025

Variant calling is done per contig

#252

· GallVp opened

on Jul 3, 2025

Expose extra options for the bcftools

#251

· GallVp opened

on Jul 3, 2025

Use Winnowmap for alignment

#250

· GallVp opened

on Jul 3, 2025

Only support single-end HiFi/long reads via <code>reads_1</code> from the assembly sheet.

#249

· GallVp opened

on Jul 3, 2025

Can we add the map-back-profile to the HiC map?

#248

· GallVp opened

on Jul 3, 2025

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The HiC combination map should be possible for N haplotypes

#247

· GallVp opened

on Jul 3, 2025

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Slim down the <code>Orthofinder</code> results dir

#243

· GallVp opened

on Jul 1, 2025

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