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cdskit mask
Kenji Fukushima edited this page Mar 6, 2023
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3 revisions
cdskit mask masks ambiguous and/or stop codons.
cdskit mask --seqfile input.fasta --outfile output.fasta
>stop
---ATGTAAATTATGTTGAAG---
>ambiguous1
---ATGTNAATTATGTTGAAG---
>ambiguous2
---ATGT-AATTATGTTGAAG---
>all
---ATGTAAATT--GTTGANG---
>stop
---ATGNNNATTATGTTGAAG---
>ambiguous1
---ATGNNNATTATGTTGAAG---
>ambiguous2
---ATGNNNATTATGTTGAAG---
>all
---ATGNNNATTNNNTTGNNN---