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cdskit stats
Kenji Fukushima edited this page Mar 7, 2023
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3 revisions
cdskit stats prints sequence statistics.
cdskit stats --seqfile input.fasta
>scaffold_1
GTCTTGTCCgggcagtcccttggcctcagtgattatgtggtagatgaagc
gggttgtacgttccaatagtgggtatcagagtttttgttatccccttctc
ttgaccagaatatttcaggaccttggagtccctttgcatagagccgaatc
tagaatttcaggcagctctaatgttgtgactgcatcttcgctctataatt
tcaatttggtcaaggttaa...
Number of sequences: 2
Total length: 62,067,787
Total softmasked length: 38,082,422
Total N length: 0
Total gap (-) length: 0
GC content: 57.8%