cdskit printseq

cdskit printseq prints a subset of sequences with a regex.

Example

Command

cdskit printseq -s input.fasta -n seq_[AG] -o output.fasta

input.fasta

>seq_A
AAAAAAAAAAAA
>seq_T
TTTTTTTTTTTT
>seq_G
GGGGGGGGGGGG
>seq_C
CCCCCCCCCCCC

output.fasta

>seq_A
AAAAAAAAAAAA
>seq_G
GGGGGGGGGGGG